PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008956-PA
Common NameOsI_08753
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 476aa    MW: 51912.8 Da    PI: 5.8092
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008956-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.7e-0773114540
          zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                        C+ ++e++   +C+++   lC +C  + H+       Ht++
  BGIOSGA008956-PA  73 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 114
                       7*****************************657888888876 PP
2zf-B_box21.93.6e-07116158541
          zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                        C+++  +++   C + ++ lC++C  ++H g       H++++
  BGIOSGA008956-PA 116 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 158
                       7*****************************.5588889998876 PP
3CCT64.24e-22419462144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  BGIOSGA008956-PA 419 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 462
                       899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.95469116IPR000315B-box-type zinc finger
SMARTSM003362.9E-1269116IPR000315B-box-type zinc finger
CDDcd000211.00E-773116No hitNo description
PROSITE profilePS501199.058112159IPR000315B-box-type zinc finger
CDDcd000218.84E-6116159No hitNo description
SMARTSM003360.24117159IPR000315B-box-type zinc finger
PfamPF062038.7E-17419461IPR010402CCT domain
PROSITE profilePS5101715.408419461IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRLQSNSSGS FHGLYQYTYI SPTLTKEWKQ THHYPGRIPL NSTVEQKARK VAVLVALSAS  60
GSAPVLYRTM DALCDFCGEQ RSMVYCRSDA ASLCLSCDRN VHSANALSRR HTRTLLCDRC  120
VGQPAAVRCL EENTSLCQNC DWNGHGAASS AAGHKRQTIN CYSGCPSSAE LSRIWSFSMD  180
IPTVAAEPNC EEGINMMSIN DNDVNNHCGA PEDGRLLDIA STVLMSDLPT GDKFKPLIGS  240
SSGDGMNLLP LNSDQPAEPV STTPKAPCVT DKDMFNDGSV YGDFCVDDAD LTFENYEELF  300
GTSHVQTEQL FDDAGIDSYF EMKDVPADES NEQPKPVQPE CSNVASVDSG MSNPAARADS  360
SHCIPGRQAI SNISLSFSGL TGESSAGDFQ DCGVSSMILM GEPPWHPPGP ESSSAGGSRD  420
NALTRYKEKK KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428432KKKRR
2428433KKKRRK
3429433KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.34000.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166324750.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
GenBankCT8322800.0CT832280.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J16, full insert sequence.
GenBankCT8322820.0CT832282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLB8AHP40.0B8AHP4_ORYSI; Uncharacterized protein
STRINGONIVA02G33840.10.0(Oryza nivara)
STRINGORGLA02G0262700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.46e-95CONSTANS-like 9