PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007898-PA
Common NameOsI_06592
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 362aa    MW: 39520.9 Da    PI: 6.9956
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007898-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31e-51101411128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  BGIOSGA007898-PA  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQEEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 101
                       69****************************.9***************943444442456********************************** PP

               NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++    +g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  BGIOSGA007898-PA 102 AIFLGggGGTRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141
                       ****8777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-588161IPR003441NAC domain
PROSITE profilePS5100558.39610161IPR003441NAC domain
PfamPF023651.3E-2711141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MHPNGAPLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQEEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGGGGG TRIGLRKTLV  120
FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE  180
DELRYQLLHG VGMSSSPVDQ KHVLLQEQLV AHGAHGGGFV VPAFDASMHL PQLASADAAP  240
CGGGGGGGGG HVAFASMNPL DAAGCGSQNM MTMKMAATSG GEMLLMRSGG VDGGRFGAAA  300
DWSILDKLLA SHQNLDQLFH GKVAGAHQQQ QQMAMDAASS LQRLPFHHYL GLEAADLLKF  360
SM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50816715171NO APICAL MERISTEM PROTEIN
1ut4_B2e-50816715171NO APICAL MERISTEM PROTEIN
1ut7_A2e-50816715171NO APICAL MERISTEM PROTEIN
1ut7_B2e-50816715171NO APICAL MERISTEM PROTEIN
3swm_A2e-50816718174NAC domain-containing protein 19
3swm_B2e-50816718174NAC domain-containing protein 19
3swm_C2e-50816718174NAC domain-containing protein 19
3swm_D2e-50816718174NAC domain-containing protein 19
3swp_A2e-50816718174NAC domain-containing protein 19
3swp_B2e-50816718174NAC domain-containing protein 19
3swp_C2e-50816718174NAC domain-containing protein 19
3swp_D2e-50816718174NAC domain-containing protein 19
4dul_A2e-50816715171NAC domain-containing protein 19
4dul_B2e-50816715171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.518310.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329739610.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639430.0AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence.
GenBankAK1012800.0AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624882.10.0NAC domain-containing protein 76-like
RefseqXP_025878787.10.0NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-109NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLB8AFC10.0B8AFC1_ORYSI; Uncharacterized protein
STRINGONIVA02G12010.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.36e-85NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]