PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA007783-PA | ||||||||
Common Name | OsI_06364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 28191.6 Da PI: 4.9419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 118.2 | 8.1e-37 | 12 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrF+Ptde+lvv+yL+++++++++ + i+++d+y+v+Pw+Lp +++++++++ yfF+ +++++ +++r+t sg+Wk tg++k++ BGIOSGA007783-PA 12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTMAAREA----QARRTTPSGFWKPTGTKKTI 99 79*************************988.55***************778888999*******99875....7899**************** PP NAM 93 lsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 ++ ++ + +k+ +vfy +g++ + +kt+W+mheyrl BGIOSGA007783-PA 100 FVVaggHEVPTAVKRRFVFYlghhqpSGSS-NNNKTSWIMHEYRL 143 99976666669*********6554433333.336*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-42 | 4 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.616 | 12 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-22 | 13 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM 60 AMYGSDHDRY FFTMAAREAQ ARRTTPSGFW KPTGTKKTIF VVAGGHEVPT AVKRRFVFYL 120 GHHQPSGSSN NNKTSWIMHE YRLMNSPRAA VPSSSSVNRL PTDDLTEEMV LCRISNKDLP 180 KPPFIHNGLL QFSSVGLNGD GYNYLILDHL EPPAMEYPNV DIGNVDDAAA ADDDPGDLDE 240 EIDDSMQRNH GG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-28 | 12 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-28 | 12 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-28 | 12 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-28 | 12 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-28 | 12 | 177 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-28 | 12 | 177 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10944 | 1e-88 | flower| panicle| seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107283 | 0.0 | AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence. | |||
GenBank | EF122479 | 0.0 | EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625739.1 | 0.0 | NAC domain-containing protein 48-like | ||||
TrEMBL | B8AE67 | 0.0 | B8AE67_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G09840.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16540 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 4e-34 | NAC family protein |