PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA007700-PA | ||||||||
Common Name | OsI_06158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 279aa MW: 29869.2 Da PI: 6.2625 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 45 | 88 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w++ BGIOSGA007700-PA 45 RRPFTAEEDAAILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 88 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 9 | 27 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.228 | 9 | 26 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 22.131 | 39 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-21 | 43 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-16 | 44 | 92 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.36E-14 | 44 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-15 | 45 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-13 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEAECDRIKG PWSPEEDEAL RRLVERARGE ELDGDREGDP GEVERRPFTA EEDAAILRAH 60 ARLGNRWAAI ARLLPGRTDN AVKNHWNSSL KRKLATATDG GEIDRPCKRV SPGPGSPTGS 120 ERSELSHGGC GSGSGGGQVF RPVPRPGGFD AISAADVVRP PRRRDDNDDD PLTSLSLSLS 180 LPGFHHDSAR SHFQELPSPS RSPSPPPSPP AASPSAYPFN ADLVSAMQEM IRTEVRNYMA 240 GVGLRAGCGP GAVAESFMPQ LVDGVMRAAA ERVGVVTRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-23 | 8 | 94 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-23 | 8 | 94 | 3 | 105 | C-Myb DNA-Binding Domain |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.59125 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297598728 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623498.1 | 1e-134 | transcription factor MYB44 | ||||
TrEMBL | B8AJ81 | 0.0 | B8AJ81_ORYSI; Uncharacterized protein | ||||
STRING | OPUNC02G05820.1 | 1e-141 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-39 | myb domain protein r1 |