PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007700-PA
Common NameOsI_06158
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 279aa    MW: 29869.2 Da    PI: 6.2625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007700-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-174588146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      r ++T+eEd  +++a+++lG++ W++Iar ++ gRt++ +k++w++
  BGIOSGA007700-PA 45 RRPFTAEEDAAILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 88
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-4927IPR009057Homeodomain-like
PROSITE profilePS500904.228926IPR017877Myb-like domain
PROSITE profilePS5129422.1313994IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-214394IPR009057Homeodomain-like
SMARTSM007174.6E-164492IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-144494IPR009057Homeodomain-like
PfamPF002493.2E-154588IPR001005SANT/Myb domain
CDDcd001675.53E-134790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAECDRIKG PWSPEEDEAL RRLVERARGE ELDGDREGDP GEVERRPFTA EEDAAILRAH  60
ARLGNRWAAI ARLLPGRTDN AVKNHWNSSL KRKLATATDG GEIDRPCKRV SPGPGSPTGS  120
ERSELSHGGC GSGSGGGQVF RPVPRPGGFD AISAADVVRP PRRRDDNDDD PLTSLSLSLS  180
LPGFHHDSAR SHFQELPSPS RSPSPPPSPP AASPSAYPFN ADLVSAMQEM IRTEVRNYMA  240
GVGLRAGCGP GAVAESFMPQ LVDGVMRAAA ERVGVVTRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-238943105C-Myb DNA-Binding Domain
1msf_C2e-238943105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.591250.0callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975987280.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623498.11e-134transcription factor MYB44
TrEMBLB8AJ810.0B8AJ81_ORYSI; Uncharacterized protein
STRINGOPUNC02G05820.11e-141(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-39myb domain protein r1