PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007539-PA
Common NameOsI_05853
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 290aa    MW: 30963.2 Da    PI: 4.8081
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007539-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.7e-17198235136
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                       C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  BGIOSGA007539-PA 198 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 235
                       *****88888*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062034.6E-16123165IPR010402CCT domain
PROSITE profilePS5101713.384123165IPR010402CCT domain
PROSITE profilePS501149.249192240IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-12192245IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-12196248No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15197238IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.53E-14197241No hitNo description
PfamPF003201.0E-14198235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440198225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSGHHEAKPY QPRRGPAPAD EEAAPAAAAD EAEAEAEVEA MERYEQEQEY EEGEEGEEEE  60
YEGGEGVPMD ADASAAAVAG MDPHGEMVQA VLLLLGGREL APGSGSVPSS SAAYSKKMNF  120
PHRMASLMRF REKRKERNFD KKIRYTVRKE VALRMQRNRG QFTSSKSKAE EATSAITSSE  180
GSPNWGAVEG RPPSAAECHH CGISAASTPM MRRGPDGPRT LCNACGLMWA NKGTMREVTK  240
GPPVPLQIVP AATNDVQNGI VEATGVEQHN SAVEEAVSAA NGHESQSGVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.63900.0callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329789550.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622990.11e-146GATA transcription factor 17 isoform X1
SwissprotQ6Z4331e-147GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA2X0W90.0A2X0W9_ORYSI; Uncharacterized protein
STRINGOPUNC02G02970.11e-148(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-53ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]