PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA007458-PA

Common Name

OsI_05709

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

BES1

Protein Properties

Length: 565aa MW: 63552.6 Da PI: 5.3172

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA007458-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	76.3	9.5e-24	1	106	47	142
DUF822 47 nneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa... 133 +n+Vl+AL+r+AGw+v++DGtt+r++s+pl ++++ g ++ +s+e+++ s+l+s+a+ +p++s+++++++++++spsslds+ +a++ BGIOSGA007458-PA 1 MNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVETPSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsik 93 7**************************998999**********99899*******************************998776 PP DUF822 134 ....asllpvlsv 142 ++ +v+s BGIOSGA007458-PA 94 nekyGNSDSVSSL 106 6665444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.2E-21	1	109	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.11E-169	127	559	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.5E-172	127	560	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.3E-81	152	517	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	165	179	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	186	204	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	299	321	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	372	391	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	406	422	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	423	434	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	441	464	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-50	479	501	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MNDVLAALAR AAGWTVHPDG TTFRASSQPL HPPTPQSPGI FHVNSVETPS FTSVLNSYAI 60 GTPLDSQASM LQTDDSLSPS SLDSVVVADQ SIKNEKYGNS DSVSSLNCLE NHQLTRASAA 120 LAGDYTRTPY IPVYASLPMG IINSHCQLID PEGIRAELMH LKSLNVDGVI VDCWWGIVEA 180 WIPHKYEWSG YRDLFGIIKE FKLKVQVVLS FHGSGETGSG GVSLPKWVME IAQENQDVFF 240 TDREGRRNME CLSWGIDKER VLRGRTGIEA YFDFMRSFHM EFRNLTEEGL ISAIEIGLGV 300 SGELKYPSCP ERMGWRYPGI GEFQCYDRYM QKNLRQAALS RGHLFWARGP DNAGYYNSRP 360 HETGFFCDGG DYDSYYGRFF LNWYSGILID HVDQVLSLAT LAFDGVETVV KIPSIYWWYR 420 TASHAAELTA GFYNPTNRDG YSPVFRMLKK HSVILKFVCY GPEFTIQENN EAFADPEGLT 480 WQVMNAAWDH GLSISVESAL PCLDGEMYSQ ILDTAKPRHD PDRHHVSFFA YRQLPSFLLQ 540 RDVCFSELGN FVKCMHGEAT QIVEG

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MNDVLAALAR AAGWTVHPDG TTFRASSQPL HPPTPQSPGI FHVNSVETPS FTSVLNSYAI  60
GTPLDSQASM LQTDDSLSPS SLDSVVVADQ SIKNEKYGNS DSVSSLNCLE NHQLTRASAA  120
LAGDYTRTPY IPVYASLPMG IINSHCQLID PEGIRAELMH LKSLNVDGVI VDCWWGIVEA  180
WIPHKYEWSG YRDLFGIIKE FKLKVQVVLS FHGSGETGSG GVSLPKWVME IAQENQDVFF  240
TDREGRRNME CLSWGIDKER VLRGRTGIEA YFDFMRSFHM EFRNLTEEGL ISAIEIGLGV  300
SGELKYPSCP ERMGWRYPGI GEFQCYDRYM QKNLRQAALS RGHLFWARGP DNAGYYNSRP  360
HETGFFCDGG DYDSYYGRFF LNWYSGILID HVDQVLSLAT LAFDGVETVV KIPSIYWWYR  420
TASHAAELTA GFYNPTNRDG YSPVFRMLKK HSVILKFVCY GPEFTIQENN EAFADPEGLT  480
WQVMNAAWDH GLSISVESAL PCLDGEMYSQ ILDTAKPRHD PDRHHVSFFA YRQLPSFLLQ  540
RDVCFSELGN FVKCMHGEAT QIVEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-125	130	558	11	444	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.49427	0.0	flower\| leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37989672	0.0

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120049	0.0	AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622759.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A2X0H4	0.0	A2X0H4_ORYSI; Beta-amylase
STRING	OBART02G02330.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]