PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA007201-PA | ||||||||
Common Name | OsI_05697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 32721.4 Da PI: 8.7159 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143 | 1.7e-44 | 10 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF P+deelv++yL+kkv+++++ +++ +vd++ e p+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkat BGIOSGA007201-PA 10 LPPGFRFFPSDEELVCHYLHKKVANERIAQGSTLVDVDLHARETVGAPRcvlmqykVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKAT 102 79*************************999888*****9998866666434444533333667****************************** PP NAM 87 gkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ev + ++++vg++ktLvfy+grap+g+kt Wvmhe+rl BGIOSGA007201-PA 103 GKDREVRGSssssssssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 154 ******99866665555544444***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-50 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.996 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-27 | 11 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MALREIESTL PPGFRFFPSD EELVCHYLHK KVANERIAQG STLVDVDLHA RETVGAPRCV 60 LMQYKVAKLT ASEWYFFSFR DRKYATGSRT NRATKTGYWK ATGKDREVRG SSSSSSSSSS 120 SSRAVVGMRK TLVFYQGRAP NGVKTGWVMH EFRLDSPHSQ PREDWVLCRV FQKRKGDGDG 180 PQDSGGAASP TFTGSMSTTT LSQLQPPDHR RHAAAAAGGY YIGSQQLAAG YDSAAGFANP 240 TQPAVPHYQY GGAVIGFPEE FGGGGGVADE YGFGTYLDLG FELDDTASVL GGIRSFPQGW 300 N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-40 | 7 | 174 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-40 | 7 | 174 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-40 | 7 | 174 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-40 | 7 | 174 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 9e-40 | 7 | 174 | 17 | 169 | NAC domain-containing protein 19 |
3ulx_A | 9e-40 | 5 | 174 | 10 | 169 | Stress-induced transcription factor NAC1 |
4dul_A | 8e-40 | 7 | 174 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 8e-40 | 7 | 174 | 14 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54416 | 0.0 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990331 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105122 | 0.0 | AK105122.1 Oryza sativa Japonica Group cDNA clone:001-101-C03, full insert sequence. | |||
GenBank | AP006847 | 0.0 | AP006847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624505.1 | 1e-140 | NAC domain-containing protein 92 | ||||
Swissprot | Q84TE6 | 4e-52 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A2X0G0 | 0.0 | A2X0G0_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM02G24950.1 | 1e-179 | (Oryza glumipatula) | ||||
STRING | ONIVA02G26880.1 | 1e-179 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-65 | NAC domain containing protein 74 |