PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA007056-PA | ||||||||
Common Name | OsI_06024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 260aa MW: 28993.9 Da PI: 6.8509 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s BGIOSGA007056-PA 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 71.9 | 1.9e-24 | 72 | 171 | 2 | 100 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 q+ ++++ e ++ ++ e++++++e+e+L +R++ G+dL++L+l +++ LeqqLe s++k+R++K++ll +q+++l++ke+ l+++n BGIOSGA007056-PA 72 QTVTNTHfEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSF 164 5556666666778899999************************************************************************** PP K-box 94 Lrkklee 100 L ++++e BGIOSGA007056-PA 165 LCRMINE 171 *998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.198 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.01E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.8E-24 | 81 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.422 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP 60 TCSLRELIEH YQTVTNTHFE EINHDQQIFV EMTRMRNEME KLDGGIRRFT GDDLSNLTLA 120 DINDLEQQLE FSVTKVRARK HQLLNQQLDN LRRKEHILED QNSFLCRMIN ENHHQAAVGG 180 GDVKAMVEMA PVLSMLTAAP AYYGEESSST ALQLTPPLHA VDAAAAAGFR LQPTQPNLQD 240 PGCSSSSFHA AAAGHGLQLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 85 | 1 | 83 | MEF2C |
5f28_B | 3e-18 | 1 | 85 | 1 | 83 | MEF2C |
5f28_C | 3e-18 | 1 | 85 | 1 | 83 | MEF2C |
5f28_D | 3e-18 | 1 | 85 | 1 | 83 | MEF2C |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.56165 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 262093746 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing seeds. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109522 | 0.0 | AK109522.1 Oryza sativa Japonica Group cDNA clone:002-115-F04, full insert sequence. | |||
GenBank | FJ750933 | 0.0 | FJ750933.1 Oryza sativa clone KCS006F06 MADS-box transcription factor 29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624837.1 | 0.0 | MADS-box transcription factor 29 isoform X1 | ||||
Refseq | XP_025879036.1 | 0.0 | MADS-box transcription factor 29 isoform X1 | ||||
Swissprot | Q6H711 | 0.0 | MAD29_ORYSJ; MADS-box transcription factor 29 | ||||
TrEMBL | A2X1E2 | 0.0 | A2X1E2_ORYSI; Uncharacterized protein | ||||
TrEMBL | D3U2G5 | 0.0 | D3U2G5_ORYSA; MADS-box transcription factor 29 | ||||
TrEMBL | I1NXP1 | 0.0 | I1NXP1_ORYGL; Uncharacterized protein | ||||
STRING | OS02T0170300-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA02G0049700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 8e-45 | MIKC_MADS family protein |