PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA006953-PA | ||||||||
Common Name | OsI_06231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 320aa MW: 34565.5 Da PI: 9.0098 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.7 | 1.1e-06 | 163 | 182 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ BGIOSGA006953-PA 163 FSCPVCRKTFNRYNNLQMHM 182 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.23E-5 | 157 | 185 | No hit | No description |
PROSITE profile | PS50157 | 10.492 | 163 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.055 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-6 | 163 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 234 | 268 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 160 | 248 | 268 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEDYAQTNLI SRGHGHHHQP ELMKEFPFLS LISSTSSCIS SSGQQQQQQQ DDDGHGGHDR 60 HQLLRYGCCS GNKQQEEEEE EVTVALRIGL PAVSSASPSP SPAMANHGAS ASSTGVAGDD 120 GGGGAMTGVG VEVESVRRSG GGGGGGQYWI PTAAQILAGA TQFSCPVCRK TFNRYNNLQM 180 HMWGHGSQYR RGGTAALRGA QPTAMLRLPC YCCAAGCRNH IDHPRARPLK DFRTLQTHYR 240 RRHGARDFAC RRCAKRFAVR GDWRTHEKNC GRLWRCACGA HFRHKRSLND HARAFGAAHA 300 HAGAGAEDDG RAAAAAGVLR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993938 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108729 | 0.0 | AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624987.2 | 1e-150 | zinc finger protein WIP5 | ||||
Swissprot | Q9SVY1 | 1e-92 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A0E0G3A0 | 0.0 | A0A0E0G3A0_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8ADR6 | 0.0 | B8ADR6_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G08940.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 4e-83 | C2H2 family protein |
Publications ? help Back to Top | |||
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