PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006856-PA
Common NameOsI_06405
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 643aa    MW: 66837.3 Da    PI: 8.649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006856-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11429472553
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                       h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++ 
  BGIOSGA006856-PA 429 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 472
                       8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16423494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212424473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-15428493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9429472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-5439473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MDTIFVLGQE SRQRILHRAA ARLPGCAYVC AWAPLPLVAA AGLHHQRPSS GGAAGAARLL  60
YCVDGWLSGG EDGGGCVRAL FDAYRGSVCG AVTGCVPGWA YVGGGGGAFM ELSELELVAS  120
ASLPVQQSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGGGGGSLQ ASVEQVFSED  180
FFQQSLLEEL LQLPPTRPSS SSSSLVGSPA DGAASTSLLR TMTPMMASSS ATPSPRELAA  240
QVATTTTTTT TTTPSSSSRL HPRPPAPHHV HVSPFSRHGG VGGSGVLHFP SAEADDAAMA  300
QAMLDVISSP STSSSAAALH APWSSVKHRA QIIRSPRRGT PTTTAFRAYN AALAPRAAAS  360
RRPPGAPGQR MIKMGFSILR RMHMVRCSQE RAAAAAAAAS AAAGQRSGGD DDEDATAAPP  420
PPTSSQLHHM ISERRRRERL NESFEHLRGL LPPGSKKDKA TVLAKTLEYM NLLIAQISEL  480
EAKNRALQTQ IHQRANGSSS SRSSMIRTVN EVHHHHHHQW LAVAAAAGGS PERVQVHVIG  540
GGDHDGGASA SLSSSAPEVT VRVAVRAPER GGADVSELVL RVLALLKAMG GFTVVAVDAR  600
QPGGGGGNGV AQASLTLRAT QTVYQELHLV TAPNLQNCLK SFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432437ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.988880.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623939.10.0putative transcription factor bHLH041
TrEMBLB8AE900.0B8AE90_ORYSI; Uncharacterized protein
STRINGONIVA11G03290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-12bHLH family protein