PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006708-PA
Common NameOsI_06724
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CPP
Protein Properties Length: 274aa    MW: 30705.2 Da    PI: 8.5312
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006708-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR24.94e-08881111741
               TCR  17 YCeCfaagkkCseeCkCedCkNkee 41 
                       YCeCfaa+++C+  C+C+ C Nk e
  BGIOSGA006708-PA  88 YCECFAARVYCDG-CHCSPCGNKIE 111
                       *************.********976 PP
2TCR51.61.8e-16157196140
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       k++kgC+C+ks+ClkkYCeCf+a+  Cs++C+C+dCkN e
  BGIOSGA006708-PA 157 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 196
                       589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF551204.6E-2015143IPR020103Pseudouridine synthase, catalytic domain
PfamPF080681.4E-61747IPR012960Dyskerin-like
PfamPF015092.8E-95186IPR002501Pseudouridine synthase II, N-terminal
PROSITE profilePS5163430.31777197IPR005172CRC domain
SMARTSM011140.06785112IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-587109IPR005172CRC domain
SMARTSM011147.6E-18157198IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12160195IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001522Biological Processpseudouridine synthesis
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0009982Molecular Functionpseudouridine synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPSTPPASMS ALATTPHSPL KQPIAKHLCY GVINLNKLSN LLSHEVITWN KHLLHIEKTS  60
HNGTLDPKVT GNLIVCVDRA TRLVKSWYCE CFAARVYCDG CHCSPCGNKI ENENIRKEAI  120
ETILLRNPLA FQPKIENSPN TVTVRKDNSE AIPPIPKHNK GCHCRKSECL KKYCECFQAN  180
ILCSKNCRCQ DCKNFEGSEE RKALVQMKNA SDRNHIQEAA NFALSGATGS LGYKSSPVRR  240
KKYQENSLGE QILSEAQFQP VCSNWYGQLQ VFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3u28_A3e-20188647115H/ACA ribonucleoprotein complex subunit 4
3uai_A3e-20188647115H/ACA ribonucleoprotein complex subunit 4
5fd3_A2e-218320920135Protein lin-54 homolog
5fd3_B2e-218320920135Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.783830.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977210640.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047710.0AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.11e-123protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD14e-56TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLB8AFN80.0B8AFN8_ORYSI; Uncharacterized protein
STRINGORGLA02G0108300.11e-122(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-58Tesmin/TSO1-like CXC domain-containing protein