PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006685-PA
Common NameOsI_06775
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 565aa    MW: 61236.6 Da    PI: 4.4551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006685-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM461.7e-14101521128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya....tgkrknr.atk..sgyWka 85 
                       l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +          ++++ +r +t    g W +
  BGIOSGA006685-PA  10 LSPGFKFNPSVEQLLCFFLLPYLQHRRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGhggwRQQQVSRtVTGggGGKWIK 102
                       579************************9998888888**********834555577799**99998888722223334455233366889*99 PP

               NAM  86 tgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++++  ++       +++  +   +L f+  ++ ++ +t Wvmhe+++
  BGIOSGA006685-PA 103 QRTERPRGEEepvvvfgGETFRWEEFSLNFHADERCRSGSTGWVMHEFAV 152
                       988888777655555544444888899****99999999*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-273172IPR003441NAC domain
PROSITE profilePS5100523.10710172IPR003441NAC domain
PfamPF023651.1E-912151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MATAAESQGL SPGFKFNPSV EQLLCFFLLP YLQHRRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGWRQQQVSR TVTGGGGGKW IKQRTERPRG EEEPVVVFGG  120
ETFRWEEFSL NFHADERCRS GSTGWVMHEF AVVPPAGSRV AATHTACRIA FTGHGQKRKR  180
VPDGYVFVDV HVQTAAAAAA VAPPLPMLSS YGEPPHEHFS DDHPPPHSYT YYTQEYQQFL  240
PAAEQSDQEQ EYCAPVQQNF QDYHVAAAEQ TDQDYFYTEM INQEQDYAYQ QQDYAYQQQQ  300
QHLFHGDFLA TSQQFLGQDH EVMFTGLGGG LVVSDNGEHA SAAAPATEPR VHDVFLETLV  360
PEPPENAYVD GAGESAMASA SSAGGAPLLE QPFATPPQQF LDQEPAPAGL NDGGAMIYNN  420
NGDGEHDAAP AAQPPARYYS GPVPAVDSVF LDKMWEYLMA DAKGLCRIDA PINNGEHAAA  480
PAPAADDPLA AQHGHGDAPP LPVPPDAAEL ERVVGHLLRE VEDIIKVAAA GGYGGSSDKP  540
LSEFDKAQNQ ILAKLMAVFN QVAES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2X3I60.0A2X3I6_ORYSI; Uncharacterized protein
STRINGORUFI02G12670.10.0(Oryza rufipogon)
STRINGONIVA02G35680.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123