PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA006381-PA | ||||||||
Common Name | OsI_07407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 243aa MW: 25495.4 Da PI: 10.4514 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.2 | 2.2e-23 | 28 | 127 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 rWt+qe+l+Lie++r +e r + + + +p+W++v++++r++g+er+++qC+++w+nl+++ykkik+ BGIOSGA006381-PA 28 RWTRQEILVLIEGKRMVEGRGGGRGgrgraaaaaaaaaaaaaggsggeaavaALEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKD 120 8**************999988843224557778888999999999999999888*************************************** PP trihelix 67 gekkrts 73 +e+++ s BGIOSGA006381-PA 121 NEISGLS 127 **99854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-6 | 28 | 40 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-6 | 78 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.0E-8 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSTAGDPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA 60 AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKD 120 NEISGLSANG FTSTSKDKQP EQQAASRGTP PPPPPTTQQQ QGGQKRRRAD DDEEEEDDGR 180 RGGELQSKLV EILDRSSRMV AAQLEAQNAN SRLDREQRRD QAASLAVVLG RLADALGRIA 240 DKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835475 | 0.0 | CT835475.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038B06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623609.1 | 3e-41 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 1e-29 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | B8AIN0 | 1e-168 | B8AIN0_ORYSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3915 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-26 | Trihelix family protein |
Publications ? help Back to Top | |||
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