 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA006304-PA |
| Common Name | OsI_07553 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
E2F/DP |
| Protein Properties |
Length: 490aa MW: 52490.5 Da PI: 4.6794 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA006304-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 84.9 | 6.4e-27 | 165 | 230 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++ll+++++gi++ln++a++L +v ++RRiYDi+NVLe+++liek+ kn+irwkg
BGIOSGA006304-PA 165 RYDSSLGLLTKKFINLLKQAPDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 230
6899******************************...99..****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008284 | Biological Process | positive regulation of cell proliferation |
| GO:0009733 | Biological Process | response to auxin |
| GO:0010090 | Biological Process | trichome morphogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0051302 | Biological Process | regulation of cell division |
| GO:0051446 | Biological Process | positive regulation of meiotic cell cycle |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 490 aa
Download sequence Send
to blast |
MAGSGRPPAA QKKILQSLRP PLPFAASSRS PFAAPNDYHR FPSGGAAAAA ASGSGGIGAG 60
GAGGGGGDIE EGLVIRTPLT SDTGYTTVAT PQQKRKAPEE SDVAESSDCM ITSPGFTVSP 120
MLTPVSGKAV KTSKSKTKNN KAGPQTPTSN VGSPLNPPTP VGTCRYDSSL GLLTKKFINL 180
LKQAPDGILD LNNAAETLEV QKRRIYDITN VLEGIGLIEK TLKNRIRWKG LDDSGVELDN 240
GLSALQAEVE NLSLKEQALD ERISDMREKL RGLTEDENNQ RWLYVTEDDI KGLPCFQNET 300
LIAIKAPHGT TLEVPDPDEA GDYLQRRYRI VLRSTMGPID VYLVSQFDEK FEDLGGGATP 360
SGHANVPKHQ PTEVFNTTNA GVGQCSNSVA VDNNIQHSQT IPQDPSASHD FGGMTRIIPS 420
DIDTDADYWL ISEGDVSITD MWKTAPDVQW DEGLDTDVFL SEDVRTPSSH NQQPSAVGGP 480
QMQVSDMHKP
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Os.423 | 0.0 | callus| flower| leaf| panicle| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB041725 | 0.0 | AB041725.1 Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds. |
