PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006275-PA
Common NameOsI_07617
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 691aa    MW: 72690 Da    PI: 10.3187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006275-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.8e-08194238244
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                       ++W+ eEd  l  +v+++G g+W  I ++      Rt  q++ rw
  BGIOSGA006275-PA 194 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 238
                       68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.555188246IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-11188245IPR009057Homeodomain-like
SMARTSM007172.4E-6192244IPR001005SANT/Myb domain
PfamPF002493.4E-6194238IPR001005SANT/Myb domain
SuperFamilySSF466896.5E-13195254IPR009057Homeodomain-like
CDDcd116606.74E-18196243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDAAAAGGGG AAKRKRSFSV GRRLPHPAQE MGKQVGAGKG IDWRALVRRT STGITSAREY  60
QMLWRHLAYG HEFVESVEPA SLPLDDGSDL ECEIEIVPAP GNEALAEATS FAKTIITGSS  120
REQTSGQRVN SEAAALNTPN EKIVRVPSDK QLVPGHRLTN GTGPVSSSKQ PSHTGSSPDP  180
LDPNGHPKKK KKPKPWSREE DMELGAGVQK HGEGNWMEIL HKYKFDSSRT HLQLQQRWAL  240
ICKRQGSTKP ATPKIPNVMS EELKAAQKAF SLAIGTTRSS TLRPGGVPHH NPMVTTTTPE  300
VKSVTAPSPL PVPVHVVPVP VPVQPVQVQL PPPQLHQAPA QSAPPPPKVS NASNKSRNNS  360
KKQVAQSIPV NGPLSIQEAA LAAGGRIAEP SVATNFLKAA QSTKAVHIRS RGTGSSKSST  420
GSKTPTVAGE PGTQLGSDQH LELQSTGGPS QVLTAHATEQ VHNVSEVAGV NPLGQSTGVH  480
LSETKKALNT TPVSGSSDKM EIDDNSNYFA VTMEDLFPED VKQEDVQDPK IEEAIDPKDA  540
DMLEFDRFVA QGCLNKDNVD KSKAAKIAPE AQSVIGSQKK QLKTLPTVGK SNPVFAGPPA  600
TAKKTKAPVP QGGMSSGIVG VLNRSLGGKA PAPATTGTQS TVQKQQSMSS KGNLLVPKNV  660
APGTVTPANN RANTAVNGAS KVNPPASQKP A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192PKKKKKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.149850.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329784660.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4289000.0AJ428900.1 Oryza sativa partial mRNA for putative Myb-family transcription factor (myb-L1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLA2X5Y70.0A2X5Y7_ORYSI; Uncharacterized protein
STRINGORGLA02G0172900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-32MYB_related family protein