PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006205-PA
Common NameOsI_07756
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 285aa    MW: 30465.4 Da    PI: 8.1848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006205-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.4e-077596223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       C +Cgk F+r  nL+ H+r H
  BGIOSGA006205-PA 75 FCDICGKGFRRDANLRMHMRAH 96
                      6*******************99 PP
2zf-C2H2130.00032160184123
                       EEETTTT..EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                       y C+ Cg  k+F    +L++H+r +
  BGIOSGA006205-PA 160 YACERCGgkKRFAVLADLRSHLRHC 184
                       89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.22E-67196No hitNo description
PROSITE profilePS5015711.6147496IPR007087Zinc finger, C2H2
SMARTSM003550.00197496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-67696IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035573122155IPR015880Zinc finger, C2H2-like
SMARTSM0035517160183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKSTTHLLAG GGGGGSVAPP TAATAPTLAM EVGDPSGALV GGAGGAGAGG GDGDARDALL  60
RLLDAAELLA EHVHFCDICG KGFRRDANLR MHMRAHGDRF KTLDALSRPG QPKPPAGREV  120
RFSCPYAGCN RNRAHRRFRP LKSAVCARNH FRRSHCPKLY ACERCGGKKR FAVLADLRSH  180
LRHCGEEAQW RCSCGTTFSR KDKLFGHLAL FEGHTPAIAE PNKGVATAAA EASISMMEEG  240
GVEANCDREE DEEGGFDPKF FQEWMEELRG GVVAPNWSAP SEAGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.57550.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329813430.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627485.11e-164protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ943I61e-66STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLB8AEA70.0B8AEA7_ORYSI; Uncharacterized protein
STRINGONIVA02G23610.11e-165(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.38e-65C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]