PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA005934-PA | ||||||||
Common Name | OsI_08282 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 570aa MW: 61786.4 Da PI: 4.4586 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.4 | 2.2e-29 | 88 | 172 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea BGIOSGA005934-PA 88 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 172 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 108.2 | 5.5e-34 | 337 | 422 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a BGIOSGA005934-PA 337 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 422 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.22 | 85 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.9E-21 | 87 | 173 | No hit | No description |
CDD | cd12203 | 2.42E-27 | 87 | 152 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 87 | 145 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-5 | 334 | 396 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.851 | 336 | 394 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-5 | 336 | 393 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.43E-5 | 336 | 404 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 6.53E-27 | 336 | 401 | No hit | No description |
Pfam | PF13837 | 2.1E-22 | 337 | 423 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MQHPQGAGDP PYGVVPAPPT MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV 60 NSNDDDMMMV DDVVVAGGVG GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE 120 LSRRLAELGY QRSGKKCKEK FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP 180 PPQQRQGMPV EDPQPLAMAR MMLPGAADLG FLSMSSESES DDESDEEEEE EEEEAVAPGG 240 GGREGLGDDG DGDGEGGSST RKLMAMFEGM MRQVTEKQDA MQRVFLETLE KWEAERTERE 300 EAWRRKELVP VPAPRAKAED AWAAAGGDGS GTTAPSRWPK EEVQALIDLR MEKEEQYNDM 360 GPKGPLWEEI AAGMQRIGYN RSAKRCKEKW ENINKYFKKV KESNKRRPED SKTCPYFHQL 420 DAIYRKKHFA GRGGGGGGVT IAASHSSLAI VTVSEQDNPS QRELEGKSSN DVGNVQLAVP 480 LLVHNAPDKK VEGSEGEPNV TAAAEETDSD EMGGEYTDDG DDDDKMQYKI EFQKPTAGGG 540 GDGNDAPVPA TTAAATSSAP TSNTSFLAVQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13466 | 0.0 | callus| flower| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988405 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111742 | 0.0 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878530.1 | 0.0 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | B8AG14 | 0.0 | B8AG14_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI02G27390.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA05G15440.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 4e-44 | Trihelix family protein |