PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA005828-PA | ||||||||
Common Name | OsI_08501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 489aa MW: 51421.1 Da PI: 6.7908 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ l+++a +++G W++I +++g ++t+ q++s+ qk+ BGIOSGA005828-PA 59 REKWTDEEHRLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-16 | 53 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.802 | 54 | 108 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.2E-15 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-13 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 59 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MACLQGNAMA TDENGADDRA GGESTVDHLR SHMNYGDMDL SGEEHVPKAR KPYTITKQRE 60 KWTDEEHRLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVVRE SSGSNTGSGG 120 ASAAAAAAAI QIPPPRPKRK PAHPYPRKVD GAAKKHVPAL RQLEKPPLWM QSLSEQEGSP 180 TSVLTAAQIG TEALGGGFSN NSSGSGSLAP SAAGTDEHVD GGGSPASSVD REDGCLSPSI 240 PTAELAMQAP NTKMSIATTD AKEASSEASV FRLFGKSVVV KDSDQLHLLN GSNIATSGSV 300 ERATRNILVP SFAAAPEGSS SNPWPSSMQQ FLYFLPRSDG FAAQPVMPWF SYNGSLPCAL 360 FYPAAAAAAA NQQCHRDSEG VEFRVSQREG SLTGSNTASS VVLGSSAAVP AAAAAAQNSD 420 VAESRGQGNS REAAASPRLT KCESSASVTL LQRGFMPYKR CAAESELLRS EAAGGEEAVA 480 DGELTRLCL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8149 | 0.0 | callus| flower| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988389 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111726 | 0.0 | AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623484.1 | 0.0 | protein REVEILLE 1 isoform X2 | ||||
TrEMBL | A2X8E2 | 0.0 | A2X8E2_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA09G03730.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 8e-36 | MYB_related family protein |