PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005828-PA
Common NameOsI_08501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 489aa    MW: 51421.1 Da    PI: 6.7908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005828-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-1659103147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r +WT eE+ l+++a +++G   W++I +++g ++t+ q++s+ qk+
  BGIOSGA005828-PA  59 REKWTDEEHRLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
                       789*****************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1653107IPR009057Homeodomain-like
PROSITE profilePS5129420.80254108IPR017930Myb domain
TIGRFAMsTIGR015572.2E-1557106IPR006447Myb domain, plants
SMARTSM007172.2E-1358106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-95999IPR009057Homeodomain-like
PfamPF002496.0E-1459102IPR001005SANT/Myb domain
CDDcd001672.86E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MACLQGNAMA TDENGADDRA GGESTVDHLR SHMNYGDMDL SGEEHVPKAR KPYTITKQRE  60
KWTDEEHRLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVVRE SSGSNTGSGG  120
ASAAAAAAAI QIPPPRPKRK PAHPYPRKVD GAAKKHVPAL RQLEKPPLWM QSLSEQEGSP  180
TSVLTAAQIG TEALGGGFSN NSSGSGSLAP SAAGTDEHVD GGGSPASSVD REDGCLSPSI  240
PTAELAMQAP NTKMSIATTD AKEASSEASV FRLFGKSVVV KDSDQLHLLN GSNIATSGSV  300
ERATRNILVP SFAAAPEGSS SNPWPSSMQQ FLYFLPRSDG FAAQPVMPWF SYNGSLPCAL  360
FYPAAAAAAA NQQCHRDSEG VEFRVSQREG SLTGSNTASS VVLGSSAAVP AAAAAAQNSD  420
VAESRGQGNS REAAASPRLT KCESSASVTL LQRGFMPYKR CAAESELLRS EAAGGEEAVA  480
DGELTRLCL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.81490.0callus| flower| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379883890.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117260.0AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623484.10.0protein REVEILLE 1 isoform X2
TrEMBLA2X8E20.0A2X8E2_ORYSI; Uncharacterized protein
STRINGONIVA09G03730.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.18e-36MYB_related family protein