PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005557-PA
Common NameOsI_09056
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 212aa    MW: 23098 Da    PI: 10.4202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005557-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-2090140155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+tae+Aa+a++ a+++++g
  BGIOSGA005557-PA  90 SRYRGVRRRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDVAALEFRG 140
                       79********.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-3090150No hitNo description
SuperFamilySSF541711.57E-2390150IPR016177DNA-binding domain
PfamPF008471.1E-1390140IPR001471AP2/ERF domain
SMARTSM003805.2E-3791154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-3291149IPR001471AP2/ERF domain
PROSITE profilePS5103226.05591148IPR001471AP2/ERF domain
PRINTSPR003672.9E-1192103IPR001471AP2/ERF domain
PRINTSPR003672.9E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVPRVERGGG GFHLPNSERE DSLFIRALIS VVSGDTTVPT LLPEPTMATV VAAATRQDEG  60
ECTTGAVASG GVTGGVGKRR PRRRSGGEGS RYRGVRRRPW GKWAAEIRDP RRAVRKWLGT  120
FDTAEDAARA YDVAALEFRG QRAKLNFPAS TAAQQPRPLL HHNLRENCGS NASSPVHAPE  180
HARTAAAAKD QEIWDGLREI MMLDDGSFWS MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2286148972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883RRPRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549440.0panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923550.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.11e-144ethylene-responsive transcription factor ERF109
TrEMBLB8AJ391e-152B8AJ39_ORYSI; Uncharacterized protein
STRINGOGLUM02G34120.11e-143(Oryza glumipatula)
STRINGONIVA02G33420.11e-143(Oryza nivara)
STRINGORGLA02G0291300.11e-143(Oryza glaberrima)
STRINGOBART02G33690.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-16ERF family protein