PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005408-PA
Common NameOsI_09345
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 320aa    MW: 36040.2 Da    PI: 8.4535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005408-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-1658104455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  BGIOSGA005408-PA  58 VHNLSEKRRRSRINEKMKALQSLIPNS-----SKTDKASMLDDAIEYLKQLQ 104
                       6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-2051115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-2052114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.63E-1557108No hitNo description
PfamPF000106.1E-1458104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1960109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMDGRGSQEE EHLDLIMRHH ASMGLDRCES EEALGSSESE QPTRPARPRG KRSRAAEVHN  60
LSEKRRRSRI NEKMKALQSL IPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYVPP  120
VNLSGAPEHL PIPQMSAALD QNSAKASDPS VVLQPVNQTS GALLPFELAS QHKPLFLPGV  180
PNATALEPRF LVESSRSNLQ SLRFTEPAEM IYPDEMMLKH RLTSASESTI VPGTDEKSVR  240
QNTYMMNADR FDRYALSKDQ LQHIMPKNTE SVLDMPHLQR ILTKVLIVSD YKLTIQLPIL  300
DRLQTSDTKV RVEGRIKVNP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.582521e-171callus| leaf| panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-171CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627242.10.0transcription factor SPATULA isoform X1
RefseqXP_015627243.10.0transcription factor SPATULA isoform X1
TrEMBLA2XAR20.0A2XAR2_ORYSI; Uncharacterized protein
STRINGOMERI02G33660.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-34bHLH family protein