PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005319-PA
Common NameOsI_09543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 164aa    MW: 17374.7 Da    PI: 12.3366
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005319-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.81.1e-3931134289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.... 88 
                       a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s +s++ ++s +    
  BGIOSGA005319-PA  31 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndlll 122
                       789*************************************************************99999888644444444444333.33555 PP

               TCP  89 ...........k 89 
                                   
  BGIOSGA005319-PA 123 praapfilgqaP 134
                       543333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093791IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-3337123IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTTRPDGGGG GGGAPDKQLV PASNANGTAL AVRKPPSKDR HSKVDGRGRR IRMPIICAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SNSTSNSNDL  120
LLPRAAPFIL GQAPPCRRRP HHFARARSRR HRPHPGLLGA PGQG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.515120.0callus| leaf| panicle| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627477.12e-88transcription factor TCP7
SwissprotQ9FMX25e-48TCP7_ARATH; Transcription factor TCP7
TrEMBLB8AF711e-113B8AF71_ORYSI; Uncharacterized protein
STRINGORUFI02G39810.18e-88(Oryza rufipogon)
STRINGOS02T0828566-018e-88(Oryza sativa)
STRINGONIVA02G40990.18e-88(Oryza nivara)
STRINGORGLA02G0333700.18e-88(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.12e-34TCP family protein