PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005097-PA
Common NameOsI_05023
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 312aa    MW: 33181 Da    PI: 7.5077
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005097-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.5e-242394171
          trihelix  1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                      rWt++e+l+L++arr me+r rr+ +    +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+ 
  BGIOSGA005097-PA 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
                      8**********************97764889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.981681IPR017877Myb-like domain
SuperFamilySSF466895.2E-52083IPR009057Homeodomain-like
PfamPF138373.4E-102391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSGAANATSP AAGAGTPRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSAY  60
CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVVSG AGDNAVAAGE GEGEAPPPPR  120
LESFWDMRGE QRRARQLPSS FDREVYDALV GGHGAAPPSD FGEDLADGDG VDADELPPPP  180
LMVMPISARK YVPPTASSQQ ECSDPATVSA KRGGAASDKN STSQHDGGGG GGLKDSEATY  240
DAGVGGEEGT TTATTTSIGR QVIEALERGN RMLGDQLEAQ RAAWDAEREQ RVALLAAVDK  300
LAGAVCRIAD KL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.10.0trihelix transcription factor ASR3
TrEMBLB8A8H50.0B8A8H5_ORYSI; Uncharacterized protein
STRINGOGLUM01G46800.11e-180(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-44Trihelix family protein