PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005017-PA
Common NameOsI_04861
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 280aa    MW: 30471.1 Da    PI: 4.38
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005017-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001253276123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y C+ C+k+F++++ L+ H +  H
  BGIOSGA005017-PA 253 YACKPCNKTFNTSMGLEAHSKAkH 276
                       78999**************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.196253280IPR007087Zinc finger, C2H2
PROSITE patternPS000280255276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFGEV DGDESDEEVP  60
LAIPLFPNSD DDKIKEVQNS PSKFATLKSA AAASPTPEAI VEERKNYGKS EADDDDSDEE  120
SDASGEDEYD DDEDMIDKQD SSDDDGDSSD EEETPSKNTK GTNRHVETPL NTPPQKRARL  180
ATPIMDSKAG TGKRSGYVHV ATPYPAKQAK KTPVNNDMAK QSSGYVHVAT PYPAKQAKKR  240
TANNDMSEHS AGYACKPCNK TFNTSMGLEA HSKAKHTATK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.194341e-173callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977206781e-173
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411211e-177AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694821.13e-96PREDICTED: histone deacetylase HDT2-like
TrEMBLB8A8610.0B8A861_ORYSI; Uncharacterized protein
STRINGOMERI01G37660.21e-174(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-11histone deacetylase 2C