PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004951-PA
Common NameOsI_04722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 454aa    MW: 48608 Da    PI: 8.8937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004951-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.23.4e-49651902128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       +pGfrFhPt+eel+ +yL+++vegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +
  BGIOSGA004951-PA  65 MPGFRFHPTEEELIEFYLRRNVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRA 156
                       79***************************.89***************888889**************************************** PP

               NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ +glkktLvfy+g+apkg++++W+m+eyrl
  BGIOSGA004951-PA 157 ENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 190
                       ********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5464210IPR003441NAC domain
PROSITE profilePS5100554.74164211IPR003441NAC domain
PfamPF023659.2E-2466190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MHMRRGRAAG GEGEAAAVVV MSRYDNNGHA AAAAAAAVAG GGGGGGGGGN KAAGEVDGHE  60
DDLVMPGFRF HPTEEELIEF YLRRNVEGKR FNVELITFLD LYRYDPWELP AMAAIGEKEW  120
FFYVPRDRKY RNGDRPNRVT ASGYWKATGA DRMIRAENNR PIGLKKTLVF YSGKAPKGVR  180
SSWIMNEYRL PPADTDRYHK TEISLCRVYK RTGIDDGHGQ VSTARSSAHS RGGGAAPVQD  240
NKQGSSSTST PTPPPTPSKL HLLSSECTSP PAIVTDHAAM VAHKAPSPRH HQQQQQLHAA  300
KPCGGYLQNS SMASAAGGDQ QQQFQQDFAA ALYQQYSKNT SGAFASTYSL LNLVNAASMG  360
SSAAAIDELS SLVGHGTPSY INPAAGSHNY SQFLHLPTTP SSHQPTPAPL GTTTAAAAAT  420
LPMSLAAFSD RIWDWNNPIP EAGGRDYSTS TGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-536621119165NO APICAL MERISTEM PROTEIN
1ut4_B9e-536621119165NO APICAL MERISTEM PROTEIN
1ut7_A9e-536621119165NO APICAL MERISTEM PROTEIN
1ut7_B9e-536621119165NO APICAL MERISTEM PROTEIN
4dul_A9e-536621119165NAC domain-containing protein 19
4dul_B9e-536621119165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327860.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329881110.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029020.0AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631974.10.0NAC domain-containing protein 35
TrEMBLB8A7C70.0B8A7C7_ORYSI; Uncharacterized protein
STRINGOS01T0888300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-100NAC domain containing protein 35