PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA004951-PA | ||||||||
Common Name | OsI_04722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 454aa MW: 48608 Da PI: 8.8937 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.2 | 3.4e-49 | 65 | 190 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPt+eel+ +yL+++vegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + + BGIOSGA004951-PA 65 MPGFRFHPTEEELIEFYLRRNVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRA 156 79***************************.89***************888889**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +glkktLvfy+g+apkg++++W+m+eyrl BGIOSGA004951-PA 157 ENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 190 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-54 | 64 | 210 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.741 | 64 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-24 | 66 | 190 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MHMRRGRAAG GEGEAAAVVV MSRYDNNGHA AAAAAAAVAG GGGGGGGGGN KAAGEVDGHE 60 DDLVMPGFRF HPTEEELIEF YLRRNVEGKR FNVELITFLD LYRYDPWELP AMAAIGEKEW 120 FFYVPRDRKY RNGDRPNRVT ASGYWKATGA DRMIRAENNR PIGLKKTLVF YSGKAPKGVR 180 SSWIMNEYRL PPADTDRYHK TEISLCRVYK RTGIDDGHGQ VSTARSSAHS RGGGAAPVQD 240 NKQGSSSTST PTPPPTPSKL HLLSSECTSP PAIVTDHAAM VAHKAPSPRH HQQQQQLHAA 300 KPCGGYLQNS SMASAAGGDQ QQQFQQDFAA ALYQQYSKNT SGAFASTYSL LNLVNAASMG 360 SSAAAIDELS SLVGHGTPSY INPAAGSHNY SQFLHLPTTP SSHQPTPAPL GTTTAAAAAT 420 LPMSLAAFSD RIWDWNNPIP EAGGRDYSTS TGFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-53 | 66 | 211 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-53 | 66 | 211 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-53 | 66 | 211 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-53 | 66 | 211 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-53 | 66 | 211 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-53 | 66 | 211 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32786 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988111 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102902 | 0.0 | AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631974.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | B8A7C7 | 0.0 | B8A7C7_ORYSI; Uncharacterized protein | ||||
STRING | OS01T0888300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-100 | NAC domain containing protein 35 |