PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004950-PA
Common NameOsI_04721
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 454aa    MW: 48603 Da    PI: 9.0809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004950-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.9e-50651902128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +
  BGIOSGA004950-PA  65 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRA 156
                       79***************************.89***************888889**************************************** PP

               NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ +glkktLvfy+g+apkg++++W+m+eyrl
  BGIOSGA004950-PA 157 ENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 190
                       ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5564210IPR003441NAC domain
PROSITE profilePS5100555.24664211IPR003441NAC domain
PfamPF023651.7E-2466190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MHMRRGRAAG GEGEAAAVVV MSRYDNNGHA AAAAAAAVAG GGGGGGGGGN KAAGEVDGHE  60
DDLVMPGFRF HPTEEELIEF YLRRKVEGKR FNVELITFLD LYRYDPWELP AMAAIGEKEW  120
FFYVPRDRKY RNGDRPNRVT ASGYWKATGA DRMIRAENNR PIGLKKTLVF YSGKAPKGVR  180
SSWIMNEYRL PPADTDRYHK TEISLCRVYK RTGIDDGHGH VSTARSSAHS RGGGAAPVQD  240
NKQGSSSTST PTPPPTPSKL HLLSSECTSP PAIVTDHAAM AAHKAPSPRH HQQQQQLHAA  300
KPCGGYLQNS SMASAAGGDQ QQQFQQDFAA ALYQQYSKNT SGAFASTYSL LNLVNAASMG  360
SSAAAIDELS SLVGHGTPSY INPAAGSHNY SQFLHLPTTP SSHQPTPAPL GTTTAAAAAT  420
LPMSLAAFSD RIWDWNNPIP EAGGRDYSTS TGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-536621119165NO APICAL MERISTEM PROTEIN
1ut4_B2e-536621119165NO APICAL MERISTEM PROTEIN
1ut7_A2e-536621119165NO APICAL MERISTEM PROTEIN
1ut7_B2e-536621119165NO APICAL MERISTEM PROTEIN
4dul_A2e-536621119165NAC domain-containing protein 19
4dul_B2e-536621119165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327860.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329881110.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029020.0AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631974.10.0NAC domain-containing protein 35
TrEMBLB8A7C60.0B8A7C6_ORYSI; Uncharacterized protein
STRINGORGLA01G0337900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-101NAC domain containing protein 35