PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004888-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 504aa    MW: 55272.9 Da    PI: 5.7391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004888-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06265286223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F+r  nL+ H+r H
  BGIOSGA004888-PA 265 FCLICGKGFKRDANLRMHMRGH 286
                       5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.5E-5262290No hitNo description
PROSITE profilePS5015711.552264291IPR007087Zinc finger, C2H2
SMARTSM003550.012264286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-5266290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
SMARTSM0035568313346IPR015880Zinc finger, C2H2-like
SMARTSM0035522351373IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MASNATRNTD PDQQGVRFSS TDQPPCFARP GQSFPAFPPL FGVQSSSLYL PDDIEAKIGN  60
QFESNPSPNN PTMDWDPQAM LSNLSFLEQK IKQVKDIVQS MSNRESQVAG GSSEAQAKQQ  120
LVTADLTCII IQLISTAGSL LPSMKNPISS NPALRHLSNT LCAPMILGTN CNLRPSANDE  180
ATIPDISKTH DYEELMNSLN TTQAESDEMM NCQNPCGGEG SEPIPMEDHD VKESDDGGER  240
ENLPPGSYVV LQLEKEEILA PHTHFCLICG KGFKRDANLR MHMRGHGDEY KTAAALAKPS  300
KDSSSESAPV TRYSCPYVGC KRNKEHKKFQ PLKTILCVKN HYKRSHCDKS YTCSRCNTKK  360
FSVIADLKTH EKHCGRDKWL CSCGTTFSRK DKLFGHVALF QGHTPALPMD DIKVTGASEQ  420
PQGSEAMNTM VGSAGYNFPG SSSDDIPNLD MKMADDPRYF SPLSFDPCFG GLDDFTRPGF  480
DISENPFSFL PSGSCSFGQQ NGDS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.87960.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329860490.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641300.10.0zinc finger protein STOP1 homolog
RefseqXP_015641307.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0E0FWB80.0A0A0E0FWB8_ORYNI; Uncharacterized protein
STRINGONIVA01G43630.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-158C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]