PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004848-PA
Common NameOsI_04529
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 256aa    MW: 28275.5 Da    PI: 5.1885
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004848-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.82.8e-4291422128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWka 85 
                       +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L +         +   e + w++F++r++++a+g r++r+t sgyWka
  BGIOSGA004848-PA   9 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlG--GggeEGEPWFYFCPRQEREARGGRPSRTTPSGYWKA 99 
                       59***************************99***************854555431..14335669**************************** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        g+   v+s++++ +g+kkt+vfy+grap+g+kt W m+eyr+
  BGIOSGA004848-PA 100 AGTPGVVYSADRRPIGMKKTMVFYRGRAPSGTKTAWKMNEYRA 142
                       *****************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.4438181IPR003441NAC domain
SuperFamilySSF1019414.71E-469180IPR003441NAC domain
PfamPF023659.3E-2410141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MADGGGRRAP GFRFYPTEEE LICFYLRNKL DGLRDDIERV IPVFDVYSVD PLQLSEIHHE  60
MLGGGGEEGE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGVVYSAD RRPIGMKKTM  120
VFYRGRAPSG TKTAWKMNEY RAFHYPDASS ASASSAGAAA PPNHLPPQLR SEFSLCRLYT  180
RSGGIRQFDR RPLAGGGDEN PGPSMAAAAA SPEENDGSGS SMQQLELMDQ GGAVDPDWDQ  240
WDDLATLTAL LYWPRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-271014119141NO APICAL MERISTEM PROTEIN
1ut4_B1e-271014119141NO APICAL MERISTEM PROTEIN
1ut7_A1e-271014119141NO APICAL MERISTEM PROTEIN
1ut7_B1e-271014119141NO APICAL MERISTEM PROTEIN
3swm_A1e-271014422147NAC domain-containing protein 19
3swm_B1e-271014422147NAC domain-containing protein 19
3swm_C1e-271014422147NAC domain-containing protein 19
3swm_D1e-271014422147NAC domain-containing protein 19
3swp_A1e-271014422147NAC domain-containing protein 19
3swp_B1e-271014422147NAC domain-containing protein 19
3swp_C1e-271014422147NAC domain-containing protein 19
3swp_D1e-271014422147NAC domain-containing protein 19
4dul_A1e-271014119141NAC domain-containing protein 19
4dul_B1e-271014119141NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712740.0AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632691.10.0NAC domain-containing protein 90 isoform X2
SwissprotQ9FMR31e-63NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0D3EWL80.0A0A0D3EWL8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0N5E40.0A0A0E0N5E4_ORYRU; Uncharacterized protein
TrEMBLA2WX860.0A2WX86_ORYSI; Uncharacterized protein
TrEMBLI1NTL20.0I1NTL2_ORYGL; Uncharacterized protein
TrEMBLQ94CW00.0Q94CW0_ORYSJ; NAC transcription factor-like protein
STRINGORUFI01G41540.10.0(Oryza rufipogon)
STRINGOS01T0862800-010.0(Oryza sativa)
STRINGORGLA01G0320200.10.0(Oryza glaberrima)
STRINGOBART01G38190.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-62NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]