PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004774-PA
Common NameOsI_04383
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 495aa    MW: 53399.9 Da    PI: 7.8085
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004774-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-1979122146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  BGIOSGA004774-PA  79 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 122
                       679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.53774128IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2076127IPR009057Homeodomain-like
SuperFamilySSF466894.38E-1776134IPR009057Homeodomain-like
SMARTSM007175.3E-1878126IPR001005SANT/Myb domain
PfamPF002494.9E-1779122IPR001005SANT/Myb domain
CDDcd001679.43E-1581124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAMVEQEGCV ENRQPLAASS SSVSDGSSYG GGGGGLAQMS PPDETLRKAV EAYKGRNWKK  60
IGPALNSTAP VYNLCKIRKD AWTTEEEQAL INAHRIYGNK WAEIAKVLPG RTDNSIKNHW  120
NSSLRKKQDM YNTSNNMVVP KLLVHDKFKD KPKLMAMEGH LDLNKAPIIN SKDQAGTAHR  180
SNCSGFLSRS SLPTAQPLTS REASVVDGSA VTLVAQALES DSVRGKGLEI DSVHEKGLEV  240
NSAPDHTGNS WTIQLEAAPS KGEAELSLKN EARSLGPLCY QIPNMEDVVP VSSSLFSDHL  300
TGNHTSEHCG DDILSPAGCT TPPPTKGKLT SQLSVDSILK SAANSFPGTP SILKRRKRDK  360
STPVSASEMK ISGSNTDRFY TPMGMEPATA TPESFKTTSF LSLGSLDGSV KSFDVSPQYR  420
ARSKRMALTK TVEKQLDFSS DGLDTCGSEI LNSSCNNSQS TLSITEAPKL KEKEHAVQLE  480
NLTKNFAHTT NLDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-187612956109B-MYB
1mse_C6e-184312712104C-Myb DNA-Binding Domain
1msf_C6e-184312712104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359RRKRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.381770.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329765380.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4300520.0AJ430052.1 Oryza sativa mRNA for transcription factor myb (myb15 gene).
GenBankFJ9402120.0FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.
GenBankFJ9402190.0FJ940219.1 Oryza sativa Japonica Group clone KCS387C07 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616493.10.0transcription factor MYB3R-2
RefseqXP_015616500.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLB8AC110.0B8AC11_ORYSI; Uncharacterized protein
STRINGONIVA10G04750.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.25e-28myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]