PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004544-PA
Common NameOsI_03930
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 527aa    MW: 58250 Da    PI: 6.5097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004544-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-10131180455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        h +rEr RR+r+ ++++ L+ +lP+ a   +  K  K +i+  A +YI++L+
  BGIOSGA004544-PA 131 RHIMRERLRRERLSQGYADLQAILPTgA---SLSKGGKNTIVAAAANYIRELE 180
                       599***********************88...99999999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-13125196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.141127179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-9129196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-7133185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MENDDDVEHP FYYFVHDDAA AGVDEHEELL ASLGFLLPPP PPPPPPPQPD QGRSAFAAYQ  60
STAAMASSSS SSESLSRRYH SSASNVHRRM HRFLRSIYDD AGDDAGATAE MQPAEGEQQQ  120
AAPSGGSARF RHIMRERLRR ERLSQGYADL QAILPTGASL SKGGKNTIVA AAANYIRELE  180
GRKGWLCAQN ELLERTTPKP GAGMVVKVRA ERSSSQPPLL SPPPPSLMAD FPPWADLADA  240
VVREIANRLP CVYDRVHLAG VCRPWRESLE RLPPLHPPPK LPYLILPLAE QPAFSCVLSG  300
GATHPFFVPE RIRHACYFGS YDGGWAFLST LHPQANRVYF LANLAGTSGT FNLPNRIQLE  360
REALELAPEE KPLLHRLVIY TATLSSDPFM DGCVVAGLIN DQAPMPGYRR QKIAFWQIED  420
RVVVGYFYMG EACWDAVDVV RHNGAFHFLT KGEDIIVGNP VFAEAGAPPQ VQWEYRCFSS  480
QGRGYDGQHV VARYLVESSG ELLMVVRCSP RPGEFTSAFK VFRMAQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.808360.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032650.0AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2WVK90.0A2WVK9_ORYSI; Uncharacterized protein
STRINGORGLA01G0267700.10.0(Oryza glaberrima)