PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004260-PA
Common NameOsI_03379
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 275aa    MW: 29821.4 Da    PI: 6.1071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004260-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-172269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEde l++ v++ G ++W+t +r+ g+ R++k+c++rw +yl
  BGIOSGA004260-PA 22 RGPWTPEEDEVLARFVAREGCDRWRTLPRRAGLLRCGKSCRLRWMNYL 69
                      89******************************99************97 PP

2Myb_DNA-binding45.71.5e-1480120648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  BGIOSGA004260-PA  80 DDEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 120
                       58***************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0961769IPR017930Myb domain
SuperFamilySSF466891.04E-2720116IPR009057Homeodomain-like
SMARTSM007171.3E-102171IPR001005SANT/Myb domain
PfamPF002491.3E-142269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-202376IPR009057Homeodomain-like
CDDcd001679.73E-102469No hitNo description
PROSITE profilePS5129424.80570124IPR017930Myb domain
SMARTSM007172.9E-1374122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2377125IPR009057Homeodomain-like
CDDcd001672.99E-1180120No hitNo description
PfamPF002494.2E-1381120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKRKRPAALR GGEEAAAAAL KRGPWTPEED EVLARFVARE GCDRWRTLPR RAGLLRCGKS  60
CRLRWMNYLR PDIKRCPIAD DEEDLILRLH RLLGNRWSLI AGRLPGRTDN EIKNYWNSHL  120
SKKLIAQGID PRTHKPLTAA ADHSNAAAAV AATSYKKAVP AKPPRTASSP AAGIECSDDR  180
ARPVDGGGDF AAMVSAADAE GFEGGFGDQF CAEDAVHGGF DMGSASAMVG DDDFSSFLDS  240
LINDEQLGDL FVVEGNDHEH GNGEIGHGDV MESKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26201245108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.555280.0flower| panicle| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082590.0AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence.
GenBankD886200.0D88620.1 Oryza sativa mRNA for OSMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644524.10.0transcription repressor MYB5
SwissprotQ388503e-74MYB5_ARATH; Transcription repressor MYB5
TrEMBLA2WU330.0A2WU33_ORYSI; Uncharacterized protein
STRINGORUFI01G30610.10.0(Oryza rufipogon)
STRINGOS01T0695900-010.0(Oryza sativa)
STRINGORGLA01G0227100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-67myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]