PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA004072-PA | ||||||||
Common Name | OsI_03001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 24988.9 Da PI: 6.5145 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.4e-17 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv ++ q G g+W+ ar g++R +k+c++rw++yl BGIOSGA004072-PA 12 KGPWTLEEDLILVSYISQNGEGSWDNLARSAGLNRNGKSCRLRWLNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.7e-16 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEd + +++ ++G++ W++Ia++++ gRt++++k++w++ BGIOSGA004072-PA 65 RGSITPEEDMVIRELHSRWGNR-WSKIAKHLP-GRTDNEIKNYWRT 108 7889******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.347 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.59E-31 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-9 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 24.36 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 65 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-24 | 66 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.20E-12 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MCGRAGEPAV RKGPWTLEED LILVSYISQN GEGSWDNLAR SAGLNRNGKS CRLRWLNYLR 60 PGVRRGSITP EEDMVIRELH SRWGNRWSKI AKHLPGRTDN EIKNYWRTKI HRKPRGRSQL 120 LQEPCEDAMG MGMSTTTSEA ASTSASSGQS QASPGVWDEY MQASSFPHPE LVSFAADHHL 180 EMAGVGEVAA AAAAQFVPTE FGFNDGFWNF VDNFWETMPV SDVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 8 | 113 | 23 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.79224 | 0.0 | panicle| seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642897.1 | 1e-168 | myb-related protein 305 | ||||
TrEMBL | A0A0E0MZS8 | 1e-167 | A0A0E0MZS8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0V5Q1 | 1e-167 | A0A0P0V5Q1_ORYSJ; Os01g0637800 protein (Fragment) | ||||
TrEMBL | B8ACC4 | 1e-167 | B8ACC4_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q5VNN2 | 1e-167 | Q5VNN2_ORYSJ; Myb-related protein 340-like | ||||
STRING | ORUFI01G26910.1 | 1e-167 | (Oryza rufipogon) | ||||
STRING | OS01T0637800-00 | 1e-167 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13240 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-58 | myb domain protein 21 |