PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA003807-PA

Common Name

OsI_02518

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 402aa MW: 44716.3 Da PI: 7.5311

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003807-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	70.9	2.7e-22	25	100	26	101
DUF260 26 qpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++ + n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P++Ga+gv+++l++++e++ a+l++l+++l BGIOSGA003807-PA 25 EKVRPLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQSGATGVMWHLERKVERELAKLSKLRQKL 100 5566789****************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.354	1	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-18	23	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MRHLQGAEDG VLAGVPTHVI LHGDEKVRPL NAQRLFGTRN IRRFVQATLP EKRDDLMSSI 60 KYEAQVWARN PQSGATGVMW HLERKVEREL AKLSKLRQKL EMCKNLAAKK SIPEAKGVGV 120 RQVTSKEQEH ERQYQACPTR ISAWTLRLFV HRSACEIPIS QTESRIACMQ FFGRAFMAFV 180 GQIQEEAINH EAKDAHYDFF PLQAHLDGGS SARTSPDSPC NPHPLGGHYC RARTTCPAGL 240 VGLNDIDHGV RQVWADTRHG IAGGEHERVH AETFALAPQP HKQHRPAYHA AHFDNNVLLL 300 GTHAAIDFYE VDASATVVSA AATADATRWP LDDEMVEDDY LDDPPAIDAA AYVTWIRQRS 360 HVSVSDARTD TDTYPARIHR NNRITPAAVK QSALAQANGC TS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MRHLQGAEDG VLAGVPTHVI LHGDEKVRPL NAQRLFGTRN IRRFVQATLP EKRDDLMSSI  60
KYEAQVWARN PQSGATGVMW HLERKVEREL AKLSKLRQKL EMCKNLAAKK SIPEAKGVGV  120
RQVTSKEQEH ERQYQACPTR ISAWTLRLFV HRSACEIPIS QTESRIACMQ FFGRAFMAFV  180
GQIQEEAINH EAKDAHYDFF PLQAHLDGGS SARTSPDSPC NPHPLGGHYC RARTTCPAGL  240
VGLNDIDHGV RQVWADTRHG IAGGEHERVH AETFALAPQP HKQHRPAYHA AHFDNNVLLL  300
GTHAAIDFYE VDASATVVSA AATADATRWP LDDEMVEDDY LDDPPAIDAA AYVTWIRQRS  360
HVSVSDARTD TDTYPARIHR NNRITPAAVK QSALAQANGC TS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2WRN4	0.0	A2WRN4_ORYSI; Uncharacterized protein
STRING	ONIVA01G22770.1	1e-143	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19872	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	5e-09	LBD family protein