PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003803-PA
Common NameOsI_02513
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 720aa    MW: 79944.4 Da    PI: 8.58
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003803-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-0694116123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cgk F r  nL+ H r H
  BGIOSGA003803-PA  94 FVCEICGKGFQRDQNLQLHRRGH 116
                       89******************988 PP
2zf-C2H218.17.2e-06533555123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cgk F r  nL+ H r H
  BGIOSGA003803-PA 533 FVCEICGKGFQRDQNLQLHRRGH 555
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-793116No hitNo description
Gene3DG3DSA:3.30.160.602.2E-594116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01294116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61494116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355130136166IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.5E-7166191No hitNo description
SMARTSM00355160171191IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.58E-7532555No hitNo description
PROSITE profilePS5015711.614533555IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-5533555IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012533555IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280535555IPR007087Zinc finger, C2H2
SMARTSM00355130575605IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.58E-7605630No hitNo description
SMARTSM00355160610630IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MFHHHLQQQQ QQQEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPSSGNNG  60
NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW  120
KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY  180
AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAMAAP  240
GHHHHHHQLL FSPPPVMAHH QELAALQEQQ QQQHHQDVMQ SPHQHQQQLV QQNCGYAVKP  300
EMAPWPTTMP YDHHHPLLQP LCNANAAATA QSSATSAPPT TPQLPAAAAA AHLNTSKNSA  360
KPTRWPHTVC ETAPPVSHPS RPEPEPRRVH LAIMPMDHED EVAHDTNFVV KIKECIIVFY  420
SSDKESCFNA SSSSLHLSLP KFIASMQQQQ QEEEEGGGLF LVEEAAEAAD QQQESSMSNL  480
TSSASTVPPP PPPSSGNNGN NSNKRKRSLP GNPDPEAEVV ALSPATLMAT NRFVCEICGK  540
GFQRDQNLQL HRRGHNLPWK LKQRGSKEAV RKKVYICPEA SCVHHDPSRA LGDLTGIKKH  600
FFRKHGEKKW KCDKCSKKYA VHSDWKAHSK ICGTREYKCD CGTIFSRSFF FLPPPPSCLL  660
PSIHGDRLQH LHSYCLLLRY TCLGWLAVLL SHCHFASNPV FSLPPALSVG TVTSRNRSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33167671368Zinc finger protein JACKDAW
5b3h_F4e-33167671368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1559572KLKQRGSKEAVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.545180.0leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567658240.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892090.0AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622202.11e-180protein indeterminate-domain 7
SwissprotQ8H1F51e-103IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLB8AAD50.0B8AAD5_ORYSI; Uncharacterized protein
STRINGONIVA01G22710.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.17e-87indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]