PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA003461-PA

Common Name

OsI_01804

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YC

Protein Properties

Length: 352aa MW: 38801.5 Da PI: 4.4719

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003461-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	86	4.1e-27	5	106	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 q+ fw ++ ie ++df +h +P+ar+kki+ +++ m++ + P++lsk celf+ el++r+w a++ +r + +dia+av++t+ +d BGIOSGA003461-PA 5 QMDEFWRDRqkeIEMTNDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWACAQSHNRCIILDTDIAEAVASTESYD 97 688997655669***************************************************************************** PP NF-YC 91 flvdivprd 99 flvdi ++ BGIOSGA003461-PA 98 FLVDILHNH 106 **98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	1.2E-9	12	90	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	8.71E-17	28	104	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-19	29	103	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MAQQQMDEFW RDRQKEIEMT NDFSEHMIPM ARLKKIVSSQ KGNMMMTFDM PAFLSKMCEL 60 FVQELAVRAW ACAQSHNRCI ILDTDIAEAV ASTESYDFLV DILHNHSVKQ KSTPCSSTKR 120 CSKGSGLTRK QYQCTFANNN IPDNIVGCSS PTVLASMMSP ALLEVAGTSL NPPNSHSICT 180 MNMINSSDPS GSSIGDINVA NQASLAPSGR FNPAILRESS CPSFLHSNND TIVAIPEGVD 240 ISGTMDVASD VAAIVINGQE EHERETNVEH HQQNEIYESI DIGIINASVA DDNKYSISWD 300 ELGMADDSLL DKFLEEFQVR KNDVSDTRIA FNKDPFLDDV VLSNPSTSNG NK

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MAQQQMDEFW RDRQKEIEMT NDFSEHMIPM ARLKKIVSSQ KGNMMMTFDM PAFLSKMCEL  60
FVQELAVRAW ACAQSHNRCI ILDTDIAEAV ASTESYDFLV DILHNHSVKQ KSTPCSSTKR  120
CSKGSGLTRK QYQCTFANNN IPDNIVGCSS PTVLASMMSP ALLEVAGTSL NPPNSHSICT  180
MNMINSSDPS GSSIGDINVA NQASLAPSGR FNPAILRESS CPSFLHSNND TIVAIPEGVD  240
ISGTMDVASD VAAIVINGQE EHERETNVEH HQQNEIYESI DIGIINASVA DDNKYSISWD  300
ELGMADDSLL DKFLEEFQVR KNDVSDTRIA FNKDPFLDDV VLSNPSTSNG NK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-17	15	103	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.89308	0.0	flower

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116011485	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242120	0.0	AK242120.1 Oryza sativa Japonica Group cDNA, clone: J075147C14, full insert sequence.
GenBank	AP003546	0.0	AP003546.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672C09.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	AY332467	0.0	AY332467.1 Oryza sativa (japonica cultivar-group) putative hap5 protein (HAP5) mRNA, complete cds.
GenBank	GU120348	0.0	GU120348.1 Oryza sativa Japonica Group clone KCS260F03 transcription binding factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621624.1	1e-142	uncharacterized protein LOC4324193 isoform X3
TrEMBL	A2WPM3	0.0	A2WPM3_ORYSI; Uncharacterized protein
STRING	ORUFI01G23220.1	1e-142	(Oryza rufipogon)
STRING	OS01T0580400-01	1e-142	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-25	nuclear factor Y, subunit C4