PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003377-PA
Common NameOsI_01620
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 284aa    MW: 29659.3 Da    PI: 11.9218
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003377-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.25.9e-2083195178
          trihelix   1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnk 59 
                       +Wt+ +v++Li+++ +++++    +                                  +kk++W++vs++m+e g  +sp+qC++k+++lnk
  BGIOSGA003377-PA  83 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNK 175
                       69999999999999855555443222233444455555555556666666666666667********************************** PP

          trihelix  60 rykkikegekkr.tsessst 78 
                       ryk++ +  +++ +++ss+t
  BGIOSGA003377-PA 176 RYKRVVDLLGRGkACKSSRT 195
                       *********99944666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-14141191No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MHAAAYQQPD PHGGGGGGGF QQQVAAVRQQ QQQSYSPYSA GASSRVIKAP GHDDGMGNGA  60
GKGGVVQQQQ QPGSVGCPWT RMKWTDGMVR LLINVVYSVG DDGDGVAAGG AAGGKASAGA  120
AGHGKAGGSG SHGAHGQAAA QQKKGKWKSV SRAMMESGHM VSPQQCEDKF NDLNKRYKRV  180
VDLLGRGKAC KSSRTTRCST PWTSSPTRPR TRRASCSAPS TSSSARCAPT TTLARPPPPP  240
RTARTAPAPP ASRPPPASTT RRPRPWPPPR PPRARRRRRP LPLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.812180.0callus| flower| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880854.12e-62sarcoplasmic reticulum histidine-rich calcium-binding protein
TrEMBLA2WP500.0A2WP50_ORYSI; Uncharacterized protein
STRINGONIVA01G16070.11e-131(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-20sequence-specific DNA binding transcription factors