PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003338-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 110aa    MW: 12801.8 Da    PI: 10.8558
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003338-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-1043772155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
                      + +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  BGIOSGA003338-PA 43 RWPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 77
                      469*****************************985 PP
2ELK26.61.3e-09118522
               ELK  5 qLlrKYsgyLgsLkqEFs 22
                      +Ll+KYsg+L+ L++EF+
  BGIOSGA003338-PA  1 MLLKKYSGCLSRLRSEFL 18
                      7****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037892.3E-6118IPR005539ELK domain
PROSITE profilePS5007112.8431780IPR001356Homeobox domain
SuperFamilySSF466893.89E-201984IPR009057Homeodomain-like
SMARTSM003891.1E-131984IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-282280IPR009057Homeodomain-like
CDDcd000868.17E-132981No hitNo description
PfamPF059201.1E-173776IPR008422Homeobox KN domain
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MLLKKYSGCL SRLRSEFLKK RKKGKLPKDA RSALLEWWNT HYRWPYPTEE DKLRLAARTG  60
LDPKQINNWF INQRKRHWKP SDGMRFALME GVAGGSSGTT LYFDTGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11221LRSEFLKKRK
21822KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.41630.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160106770.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076260.0AB007626.1 Oryza sativa Japonica Group HOS16 mRNA, partial cds.
GenBankAK2413120.0AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634297.13e-77homeobox protein knotted-1-like 1
SwissprotQ9FP293e-78KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0D9Y7A27e-76A0A0D9Y7A2_9ORYZ; Uncharacterized protein
TrEMBLA2ZS852e-76A2ZS85_ORYSJ; Uncharacterized protein
TrEMBLI1NM887e-76I1NM88_ORYGL; Uncharacterized protein
STRINGOGLUM01G14210.11e-76(Oryza glumipatula)
STRINGORGLA01G0097800.11e-76(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.13e-36KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]