PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA003265-PA

Common Name

OsI_01405

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 371aa MW: 41649.6 Da PI: 10.0077

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003265-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.4e-10	85	127	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L BGIOSGA003265-PA 85 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 127 56889*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-8	77	130	No hit	No description
SMART	SM00338	9.8E-8	83	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	85	129	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-7	86	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.5E-7	87	130	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.1E-34	169	244	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MPFAAEFDML AFNNPIELLS NAYVLCMGPT HRSIKLGTPR KQYKQLGFPI KKAGKVCLWH 60 VFLEPGQLAL AAASDSDRSK DKHEDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL 120 TQLEQELQRA RQQGIFISSS VDQTHSMSGN GALAFDMEYA RWLEEHNRQI NELRSAVNAH 180 AGDNELRGVV DKIMSHYEEI FKQKGNAAKA DVFHVLSGMW KTPAERCFLW LGGFRPSELL 240 KLLSTQLEPL TEQQLSGIAN LQQSSQQAED ALSQGMEALQ QSLAETLAGS LGSSGSTGNV 300 ANYMGQMAMA MGKLGTLENF LRQADNLRQQ TLQQMQRILT TRQSARALLV ISDYSSRLRA 360 LSSLWLARPK E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MPFAAEFDML AFNNPIELLS NAYVLCMGPT HRSIKLGTPR KQYKQLGFPI KKAGKVCLWH  60
VFLEPGQLAL AAASDSDRSK DKHEDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL  120
TQLEQELQRA RQQGIFISSS VDQTHSMSGN GALAFDMEYA RWLEEHNRQI NELRSAVNAH  180
AGDNELRGVV DKIMSHYEEI FKQKGNAAKA DVFHVLSGMW KTPAERCFLW LGGFRPSELL  240
KLLSTQLEPL TEQQLSGIAN LQQSSQQAED ALSQGMEALQ QSLAETLAGS LGSSGSTGNV  300
ANYMGQMAMA MGKLGTLENF LRQADNLRQQ TLQQMQRILT TRQSARALLV ISDYSSRLRA  360
LSSLWLARPK E

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.439	0.0	callus\| flower\| leaf\| panicle\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116012108	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051296	0.0	AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBank	AK242743	0.0	AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBank	HM991168	0.0	HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBank	KM096571	0.0	KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621703.1	0.0	transcription factor TGA2.3
Refseq	XP_015621704.1	0.0	transcription factor TGA2.3
Refseq	XP_025880532.1	0.0	transcription factor TGA2.3
Swissprot	Q0JNL3	0.0	TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBL	B8ACK1	0.0	B8ACK1_ORYSI; Uncharacterized protein
STRING	OS01T0279900-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.5	1e-143	TGACG motif-binding factor 6

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]