PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003083-PA
Common NameOsI_01044
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 495aa    MW: 55530.4 Da    PI: 7.1927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003083-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-17152241198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v +  +l lp  f++++  k   +++++lede+g+  + ++   +++++  l++GW++F+  +++k+gD+vvF+l+++++f  +
  BGIOSGA003083-PA 152 FVKHMLHSHVVSGFWLGLPAGFCNKYLPK--HDTDIVLEDENGNNHNTNY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVSTTKF--K 236
                       899********************999433..5679***************..888888..9***********************988888..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+++r
  BGIOSGA003083-PA 237 VHIIR 241
                       88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-21146242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-24147241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-27150241No hitNo description
PROSITE profilePS5086312.478152243IPR003340B3 DNA binding domain
SMARTSM010193.4E-18152244IPR003340B3 DNA binding domain
PfamPF023625.4E-16152241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRAIIIDCDE  60
DDTDDVMEVV PLKMLMPKEV ENEQRTVPGI PQTCNTQNTS NGRTNTTEVP VKGQNKCASY  120
LPKKSSVQAF CGSAMKRAQE IQTKLPAEHP SFVKHMLHSH VVSGFWLGLP AGFCNKYLPK  180
HDTDIVLEDE NGNNHNTNYL GGKQGLSAGW RGFAINHDIK VGDVVVFELV STTKFKVHII  240
RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA HDDTQNLVHE  300
AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA QKSFLHRHLL  360
RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM NVAFLLKRVD  420
DLLGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV  480
RNHDIALRKI ATAPW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.546360.0callus| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329915410.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLB8AB210.0B8AB21_ORYSI; Uncharacterized protein
STRINGOS01T0234100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-35B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]