PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002943-PA
Common NameOsI_00760
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 440aa    MW: 46014.4 Da    PI: 7.3405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002943-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12255300555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  BGIOSGA002943-PA 255 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 300
                       8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-13252304No hitNo description
SuperFamilySSF474593.66E-16252318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9255300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1703.5E-4299318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEFQQQQ QLVGSQIEHH LNQISMQMGM  60
DDESAVYDGA SMVDDLLMAS SSPHHHAGAG SFQYSSPTSS SASFRSASVS CSPESSAAAT  120
THFLGPPAPS AAAAGFHYPE VSSQAPLPLP LPPYEPQHGQ YTTVLSPPPP APELPATTTP  180
ATGGAFRRYA RHLRPRRLPK PGGCGQRMFK TAMSVLTKMH VAATYNRQYY YQQAAAAAAS  240
ASAAEAPPSG NQLQHMISER KRREKLNDSF LALKAVLPPG SKKDKTSILI RAREYVKSLE  300
SKLSELEEKN RELEARLASR PAAAAAKNDK GETAAAPAPE AGDETKRKDL VEIEVTTSGG  360
GAGAADAAAA AGGDQETCTL NVDLRGGGGG GGMSTTDVVL RTLQCLREQI GDGASLVAMS  420
TSAGSGGRPP RANLTLQLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263ERKRRE
2259264RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327700.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977197120.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.10.0uncharacterized protein LOC4327325
TrEMBLB8ADQ80.0B8ADQ8_ORYSI; Uncharacterized protein
STRINGONIVA01G07190.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-16bHLH family protein