PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA002858-PA | ||||||||
Common Name | OsI_00565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 28110.3 Da PI: 8.7621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.1e-15 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G +W++++ g+ R++k+c++rw +yl BGIOSGA002858-PA 22 KGLWSPEEDERLATHIARFGVSCWSSVPDLAGLQRCGKSCRLRWMNYL 69 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.2e-15 | 75 | 117 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rgr++ E+el++ ++ +lG+ W+ Ia++++ gR+++++k++w+ BGIOSGA002858-PA 75 RGRFSHHEEELILALHDKLGNS-WSQIAARLP-GRSDNEIKNFWN 117 89******************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 16 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.972 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-27 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-8 | 25 | 69 | No hit | No description |
PROSITE profile | PS51294 | 23.924 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-25 | 73 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-13 | 75 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-8 | 77 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRAVEQQQG GCCSEKKKKL RKGLWSPEED ERLATHIARF GVSCWSSVPD LAGLQRCGKS 60 CRLRWMNYLR PDLKRGRFSH HEEELILALH DKLGNSWSQI AARLPGRSDN EIKNFWNARL 120 RKKLRQTESS SSATTAAGAA ATGHRRGEAD RSRPPPPPPP PAPASFNTFS HDDRTTPAPA 180 AHIAAAAAVE APAAMTTTGG AVGGGVLVDN SGGHRDAVAE AARGHVGGGD DDGFLAVLLG 240 EYYLDAGGHG DGFSFLGGGG GGHVFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 20 | 124 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 118 | 124 | RLRKKLR |
2 | 119 | 125 | LRKKLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643964.1 | 1e-138 | transcription factor MYB61 | ||||
TrEMBL | A2WL51 | 0.0 | A2WL51_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI01G04660.1 | 1e-137 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14448 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-57 | myb domain protein 86 |