PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002753-PA
Common NameOsI_00337
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family RAV
Protein Properties Length: 349aa    MW: 37469.3 Da    PI: 10.2791
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002753-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.12.1e-1367115155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  BGIOSGA002753-PA  67 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 115
                       78****9888.8*********......44*************************98 PP
2B395.34.1e-30166264186
                       EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                       f+k+ tpsdv+k++rlv+pk++ae+h                + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++
  BGIOSGA002753-PA 166 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrraassdsasAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTI 258
                       89****************************99998888755566999********************************************** PP

                       EEEE-S CS
                B3  81 vFkldg 86 
                       vF+++ 
  BGIOSGA002753-PA 259 VFSRSA 264
                       **9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-1767123IPR016177DNA-binding domain
PfamPF008471.4E-867115IPR001471AP2/ERF domain
CDDcd000182.84E-1368123No hitNo description
SMARTSM003809.2E-2468129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-2168123IPR001471AP2/ERF domain
PROSITE profilePS5103222.04968123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.8E-39161281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-30163275IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-28164263No hitNo description
SMARTSM010191.7E-23166278IPR003340B3 DNA binding domain
PfamPF023621.6E-27166264IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902166278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSRPAA  60
AAAQQSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRYRGRDAAT  120
NFPGAAASAA ELAHTYADEL RQGLRRGRGM GARAQPTPSW AREPLFEKAV TPSDVGKLNR  180
LVVPKQHAEK HFPLRRAASS DSASAAATGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT  240
KGWSRFVREK GLRAGDTIVF SRSAYGPDKL LFIDCKKNNA AAATTTCAGD ERPTTSGAEP  300
RVVRLFGVDI AGGDCRKRER AVEMGQEVFL LKRQCVVHQR TPALGALLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4916327611115DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272990.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172271810.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650080.0AK065008.1 Oryza sativa Japonica Group cDNA clone:J013001E21, full insert sequence.
GenBankAP0029130.0AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCT8288860.0CT828886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA058B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622259.10.0AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS00.0Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLB8AD690.0B8AD69_ORYSI; Uncharacterized protein
STRINGORUFI01G02680.10.0(Oryza rufipogon)
STRINGOS01T0141000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.19e-72RAV family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]