PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA002708-PA | ||||||||
Common Name | OsI_00255 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 36656.7 Da PI: 4.5185 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3e-13 | 115 | 158 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 ++y+GVr +k +g+W+AeIr + + r +lg+f+ta+ A +a+ + BGIOSGA002708-PA 115 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFDTADAASAAY-QS 158 68******99.**********55.....45999*******55555555.43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-8 | 115 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.148 | 116 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-14 | 116 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-14 | 116 | 165 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 117 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-8 | 117 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-14 | 117 | 148 | No hit | No description |
PRINTS | PR00367 | 4.6E-8 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAPSKQQQQM LLKKVMAKKP KTKRLSGFGL KPSAAFSRPH VPSAAASLQP SRRVRVVFED 60 PDATDSDSDD DEDAGAASKK RYFELFIGKP ASSTKQASPA STVAAYANIG KVGSTCYRGV 120 RLRKWGKWAA EIRNPFTGHR EWLGTFDTAD AASAAYQSAS RNFAEEKRRR GVASSASPAS 180 SATPTPTASS SSSTSAAPFA HPSPSSVLEA TKPAPKPESP PLPEQAATPL LVEATNETAE 240 LPDDPEFYKD ILRGLQLPDI DPMDFRAGLD ALDISDVPAY MNGEQDVLFT EDMLLGDFAE 300 EDDLDLDDIG DDFCEDFPEI PSGYDFGRGD MFRQVDFCV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4663 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986342 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616539.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A2WKA5 | 0.0 | A2WKA5_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G02210.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12930 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 1e-11 | related to AP2 2 |