PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA002597-PA | ||||||||
Common Name | OsI_00041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 35712.6 Da PI: 6.9402 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.7 | 1.5e-55 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL++kv +++ + +i evd++k+ePwdLp k+ ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke+ BGIOSGA002597-PA 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEI 106 79********************99999556588***************544445788************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ l+g+kktLvfykgrapkg kt+Wvmheyrl BGIOSGA002597-PA 107 FRNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-62 | 10 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.621 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-28 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKVVDSR GFCVAAIGEV DLNKCEPWDL 60 PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADASPPPP PSSAEPPRQD DWAVCRIFHK SSGIKKPVPV 180 APHQVPAAAN YQQQQQMAMA SAGIIQVPMQ MQMPSMSDQL QMLDDFSTTA SLSLMAPPSY 240 STLPAGFPLQ INSGAHPQQF VGNPSMYYHQ QQQMDMAGGG FVVSEPSSLV VSPQDAADQN 300 NNAADISSMA CTMDAAIWKY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.13548 | 0.0 | panicle| seed |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK242268 | 0.0 | AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence. | |||
GenBank | GU120353 | 0.0 | GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds. | |||
GenBank | JN944365 | 0.0 | JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621005.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 1e-78 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A2WJP3 | 0.0 | A2WJP3_ORYSI; Uncharacterized protein | ||||
STRING | OS01T0104500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-78 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
---|---|---|---|
|