PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA002597-PA

Common Name

OsI_00041

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 320aa MW: 35712.6 Da PI: 6.9402

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA002597-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.5e-55	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL++kv +++ + +i evd++k+ePwdLp k+ ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke+ BGIOSGA002597-PA 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEI 106 79******************99999556588***********544445788******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ l+g+kktLvfykgrapkg kt+Wvmheyrl BGIOSGA002597-PA 107 FRNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 ********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-62	10	170	IPR003441	NAC domain
PROSITE profile	PS51005	59.621	14	170	IPR003441	NAC domain
Pfam	PF02365	2.9E-28	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKVVDSR GFCVAAIGEV DLNKCEPWDL 60 PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADASPPPP PSSAEPPRQD DWAVCRIFHK SSGIKKPVPV 180 APHQVPAAAN YQQQQQMAMA SAGIIQVPMQ MQMPSMSDQL QMLDDFSTTA SLSLMAPPSY 240 STLPAGFPLQ INSGAHPQQF VGNPSMYYHQ QQQMDMAGGG FVVSEPSSLV VSPQDAADQN 300 NNAADISSMA CTMDAAIWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-52	1	176	7	174	NAC domain-containing protein 19
3swm_B	1e-52	1	176	7	174	NAC domain-containing protein 19
3swm_C	1e-52	1	176	7	174	NAC domain-containing protein 19
3swm_D	1e-52	1	176	7	174	NAC domain-containing protein 19
3swp_A	1e-52	1	176	7	174	NAC domain-containing protein 19
3swp_B	1e-52	1	176	7	174	NAC domain-containing protein 19
3swp_C	1e-52	1	176	7	174	NAC domain-containing protein 19
3swp_D	1e-52	1	176	7	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.13548	0.0	panicle\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242268	0.0	AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence.
GenBank	GU120353	0.0	GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds.
GenBank	JN944365	0.0	JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621005.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FK44	1e-78	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A2WJP3	0.0	A2WJP3_ORYSI; Uncharacterized protein
STRING	OS01T0104500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-78	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]