PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002351-PA
Common NameOsI_00492
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-X1
Protein Properties Length: 906aa    MW: 99422.4 Da    PI: 8.4426
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002351-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06259276118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H+C   CH GpCppC
  BGIOSGA002351-PA 259 CGIHRCPVDCHDGPCPPC 276
                       ****************** PP
2zf-NF-X116.51.8e-05366385119
          zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                       CG+HkC + CH+G C + C+
  BGIOSGA002351-PA 366 CGRHKCPERCHRGSCVEtCR 385
                       ***************99997 PP
3zf-NF-X116.51.9e-05419438120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H C + C+eG+C pCp+
  BGIOSGA002351-PA 419 CGRHACRRRCCEGDCAPCPE 438
                       ******************96 PP
4zf-NF-X122.32.9e-07446465120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+HkC ++CH+G C pCp+
  BGIOSGA002351-PA 446 CGNHKCLSPCHRGACAPCPL 465
                       ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.24E-6105163No hitNo description
PROSITE patternPS013590106156IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.096106157IPR001841Zinc finger, RING-type
SMARTSM004380.02206224IPR000967Zinc finger, NF-X1-type
PfamPF014220.037207223IPR000967Zinc finger, NF-X1-type
CDDcd060087.05E-9249297No hitNo description
SMARTSM004380.0011259278IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-5259276IPR000967Zinc finger, NF-X1-type
CDDcd060082.75E-7302342No hitNo description
SMARTSM004380.082312331IPR000967Zinc finger, NF-X1-type
PfamPF014220.41312330IPR000967Zinc finger, NF-X1-type
CDDcd060085.00E-9356405No hitNo description
SMARTSM004380.035366386IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033366385IPR000967Zinc finger, NF-X1-type
CDDcd060083.65E-9409457No hitNo description
SMARTSM004380.087419438IPR000967Zinc finger, NF-X1-type
PfamPF014220.0041419437IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-10436484No hitNo description
SMARTSM004380.0038446465IPR000967Zinc finger, NF-X1-type
PfamPF014224.8E-5446464IPR000967Zinc finger, NF-X1-type
SMARTSM0043825509524IPR000967Zinc finger, NF-X1-type
PfamPF0142236513523IPR000967Zinc finger, NF-X1-type
SMARTSM00438170532577IPR000967Zinc finger, NF-X1-type
PfamPF0142289532541IPR000967Zinc finger, NF-X1-type
SMARTSM00438200614658IPR000967Zinc finger, NF-X1-type
PfamPF014220.15614624IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1668686IPR000967Zinc finger, NF-X1-type
PfamPF0142212668685IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44731752IPR000967Zinc finger, NF-X1-type
PfamPF01422170733745IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MPFSYAAAAS GSASSSRKPV PAAARRPVPS PAAAVAPAPS PSNPSAVSDS DPSSYSSSGE  60
ETDLTASDPA AASVISSYLS VAGDGADLSK VGIFLSSAAR RRSPPCLICF DPIRPSDPVW  120
SCSASCFALL HLHCIQSWAH QSSSAAPSPT WGCPKCRFPY PKSQTPTSYL CFCSKTVDPA  180
PDPWILPHSC GDVCGRRLNA DRDSGCEHNC LLLCHPGPCP PCPAIVPNAM CFCGSHRETR  240
RCSHQRYSCS GKCNKRLGCG IHRCPVDCHD GPCPPCAVRG KHKCECGETM EERLCSERVF  300
QCKRECGGML QCGKHSCERG CHAGKCGGCP LQGRRTCPCG KKDYPSLDCD AEATTCGSTC  360
EKVLGCGRHK CPERCHRGSC VETCRLVITK SCRCGGLKKE VPCYQELTCE RKCQRLRNCG  420
RHACRRRCCE GDCAPCPEVC DKRLRCGNHK CLSPCHRGAC APCPLMKTIS CNCGQTFFEV  480
PCGTEKNQKP PKCSKKCNIA RLCRHKLECR PHKCHYGACP PCKLICGEEL SCGHRCKLRC  540
HGPIAPPNPE FTLKPIKRKK EKHIDSTPGT PCPPCQEVVL VPCFGQHLGQ ERAILCSKRR  600
QFPCQNLCGN PLNCGNHYCS KACHVLQIPL SQPEGDQSAI LSLASASAFA EPCEECNLPC  660
QRVREPPCSH PCPLPCHLND CPPCKALVKR PCHCGAMVHA FECMYYNNLN ATKQQKVRSC  720
GGPCHRKLPN CPHLCSEICH PGQCPSVDQC MKKVNVRCAC NTLKKEWICQ DVLKEYRQSG  780
RDPKQIPKNQ YAVGLLACGE DCVKKVKAAD SELHLRKIQE IKTPAVEVEN VPKRRKRRNR  840
GQESVESSKF QEIKAVALKF LLVIFLCIIA VAGLYLLWKG VYRLSDWMNE MEEQRARQRH  900
LKPGRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1831837PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.124540.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329767830.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB8ADD80.0B8ADD8_ORYSI; Uncharacterized protein
STRINGOGLUM01G04180.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors