PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002283-PA
Common NameOsI_00603
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 549aa    MW: 59850.4 Da    PI: 7.0675
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002283-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.5e-075681126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+ C +f  +G C + d C+FaHg
  BGIOSGA002283-PA 56 YKTRVCETFVTSGRCMFEDGCTFAHG 81
                      9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.1E-145087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-95487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.455583IPR000571Zinc finger, CCCH-type
SMARTSM003560.00165582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206137165IPR000571Zinc finger, CCCH-type
SMARTSM003560.42137164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4140162IPR000571Zinc finger, CCCH-type
SMARTSM007024.7E-19313492IPR006620Prolyl 4-hydroxylase, alpha subunit
SMARTSM002540.0037508549IPR003582ShKT domain
PROSITE profilePS516708.775509549IPR003582ShKT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MAGRGGMEWE VGRRRDSEDV IVLSPGPPAR RRPPPVKAVE PDPGGFAYEP PEKLFYKTRV  60
CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAH  120
VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS  180
SWEMPARRSV AVTVPRTFVS VPPVAPPPPH YRVNNNSSSS SRYNAASMAA AAPPAASDAN  240
LVAQQPPPEQ GGRKMTRLEM LSLKKMTGIY GDWLEGFDLS IAQEKLVNST GGSTASSSHL  300
VYPSKSKRLS WHPRIFLYEG FLSDMECDHL VSTGRGNMDS SLAFTDGDRN SSYNNIEDIV  360
VSKIEDRISL WSFLPKENGE NIQVLKYGVN RRGSIKEEPK SSTGGHWLAT ILIYLSDVKQ  420
GGETVFPRSE MKDAQAKEGA PSQCSGYAVR PAKGNALLLF NLRPDGEIDK DSQYEECPVL  480
EGEKWLAIKH IHLRKLDSPK SSLASEDECT DEDDRCVSWA ASGECDRNPV FMIGSSDYYG  540
SCRKSCRVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gze_A4e-3230849316218Predicted protein
3gze_B4e-3230849316218Predicted protein
3gze_C4e-3230849316218Predicted protein
3gze_D4e-3230849316218Predicted protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.748350.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329928710.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704840.0AK070484.1 Oryza sativa Japonica Group cDNA clone:J023048G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622130.11e-180probable prolyl 4-hydroxylase 6 isoform X2
SwissprotQ5VR071e-125C3H1_ORYSJ; Zinc finger CCCH domain-containing protein 1
TrEMBLB8ADI20.0B8ADI2_ORYSI; Uncharacterized protein
STRINGOPUNC01G04610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1354177
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]