PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA002271-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | BES1 | ||||||||
Protein Properties | Length: 176aa MW: 19172.9 Da PI: 7.6744 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 145.2 | 5.7e-45 | 53 | 165 | 2 | 112 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 +s r+pt++ErEnn++RERrRR++a++iyaGLRa ++y+lpk+aD+n+Vl+ALc+eAG++v+dDG++ r+++++l + + +g s+++ + ss BGIOSGA002271-PA 53 TSLRHPTARERENNRQRERRRRQVATRIYAGLRAGAGYALPKHADQNDVLRALCAEAGYLVDDDGNVSRRHDERLaGAGAGGGGSSDQLQVSS 145 789************************************************************************999999************ PP DUF822 94 lq.sslkssalaspvesysa 112 ++ + + a++ + ++++ BGIOSGA002271-PA 146 YSgATEAAVAIQHQEQEQEI 165 **777777777777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.1E-30 | 55 | 156 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDQVVASGRE EAGGEAAAAM AXXXXXXXXX XXXXXXXXPW TVRRRGRAGG VTTSLRHPTA 60 RERENNRQRE RRRRQVATRI YAGLRAGAGY ALPKHADQND VLRALCAEAG YLVDDDGNVS 120 RRHDERLAGA GAGGGGSSDQ LQVSSYSGAT EAAVAIQHQE QEQEISLELT LSFTYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-13 | 56 | 133 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-13 | 56 | 133 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-13 | 56 | 133 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-13 | 56 | 133 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-164 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879038.1 | 2e-67 | BES1/BZR1 homolog protein 4-like | ||||
TrEMBL | A0A0D3EK92 | 7e-94 | A0A0D3EK92_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FH24 | 7e-94 | A0A0E0FH24_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MS39 | 7e-94 | A0A0E0MS39_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5VRV9 | 7e-94 | Q5VRV9_ORYSJ; Uncharacterized protein P0013F10.20 | ||||
STRING | ORUFI01G05260.1 | 1e-94 | (Oryza rufipogon) | ||||
STRING | ONIVA01G05630.1 | 1e-94 | (Oryza nivara) | ||||
STRING | OBART01G05000.1 | 1e-94 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 1e-08 | BES1 family protein |