PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002128-PA
Common NameOsI_000857, PCF5
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 582aa    MW: 60253.7 Da    PI: 7.322
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002128-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.3e-35211311286
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesss 79 
                       +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +                ++++s++ ++s +
  BGIOSGA002128-PA 211 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptaggagagnaAAPPSSSTHPDSAE 303
                       79**************************************************************88888888888877655555555333333 PP

               TCP  80 ssas.nss 86 
                       +s++ ++ 
  BGIOSGA002128-PA 304 NSDDqAQA 311
                       33330222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-30211284IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257213271IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
METRPPAAPA KLSYGIRRGG WTRIGAATVA AGKKAAGDLD PRHHHHRVTH GGDGGGVGGG  60
GSGGQEEADE QQQQQHDHHR LLQLHHHQGV QQDQEPPPVP VFHLQPASVR QLSGSSAEYA  120
LLSPMGDAGG HSHHHQHGFQ PQLLSFGGVG HHHHLHQFTA QPQPPAASHT RGRGGGGEIV  180
PATTTPRSRG GGGGGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ  240
FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LDVLPAWQPT AGGAGAGNAA APPSSSTHPD  300
SAENSDDQAQ AITVAHTAFD FAGGGSGGTS FLPPSLDSDA IADTIKSFFP MGGTAGGEAS  360
SSTTAAQSSA MGFQSYTPDL LSRTGSQSQE LRLSLQSLPD PMFHHQQHRH GGGGGGGNGT  420
TQQALFSGAA NYSFGGGAMW ATEQQAQNQR MLPWNVPDPG GGGGAAYLFN VSQQAAHMQA  480
AAAALGGHQS QFFFQRGPLQ SSNQPSERGW PETVEADNQM SHHQGGLSPS VSAAIGFAAP  540
GIGFSGFRLP ARIQGDEEHN GGGGGNGDKP PPPSSVSSAS HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20218271154Putative transcription factor PCF6
5zkt_B2e-20218271154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.20660.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO209752520.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634261.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A0P0UZL20.0A0A0P0UZL2_ORYSJ; Os01g0213800 protein (Fragment)
STRINGOS01T0213800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-55TCP family protein
Publications ? help Back to Top
  1. Kosugi S,Ohashi Y
    DNA binding and dimerization specificity and potential targets for the TCP protein family.
    Plant J., 2002. 30(3): p. 337-48
    [PMID:12000681]