PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA001870-PA | ||||||||
Common Name | OsI_01449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 693aa MW: 73240 Da PI: 7.4532 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.3 | 9e-16 | 444 | 490 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq BGIOSGA001870-PA 444 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 490 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.36E-17 | 437 | 494 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-20 | 438 | 499 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 440 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-13 | 444 | 490 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-20 | 444 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 446 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MEGGDERQRW RFNQTRVQSP LGSTSLHRLS LEVAMWAPKV VHCRCLTSHT HARLPRKSDG 60 NDFAELLWEN GQAVVHGRKK HPQPAFPPFG FFGGTGGGGG SSSSRAQERQ PGGIDAFAKV 120 GGGFGALGMA PAVHDFASGF GATTQDNGDD DTVPWIHYPI IDDEDAAAPA ALAAADYGSD 180 FFSELQAAAA AAAAAAPPTD LASLPASNHN GATNNRNAPV ATTTTREPSK ESHGGLSVPT 240 TRAEPQPQPQ LAAAKLPRSS GSGGGEGVMN FSLFSRPAVL ARATLESAQR TQGTDNKASN 300 VTASNRVEST VVQTASGPRS APAFADQRAA AWPPQPKEMP FASTAAAPMA PAVNLHHEMD 360 RDRAGRTMRV HKTEARKAPE ATVATSSVCS GNGAGSDELW RQQKRKCQAQ AECSASQDDD 420 LDDEPGVLRK SGTRSTKRSR TAEVHNLSER RRRDRINEKM RALQELIPNC NKIDKASMLD 480 EAIEYLKTLQ LQVQMMSMGT GLCIPPMLLP TAMQHLQIPP MAHFPHLGMG LGYGMGVFDM 540 SNTGALQMPP MPGAHFPCPM IPGASPQGLG IPGTSTMPMF GVPGQTIPSS ASSVPPFASL 600 AGLPVRPSGV PQVSGAMANM VQDQQQGIAN QQQQCLNKEA IQGANPGDSQ MQIIMQGDNE 660 NFRIPSSAQT KSSQFSDGTG KGTNARERDG AET |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 448 | 453 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27705 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987461 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102252 | 0.0 | AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619034.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | B8ACM6 | 0.0 | B8ACM6_ORYSI; Uncharacterized protein | ||||
STRING | OS01T0286100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-34 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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