PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001541-PA
Common NameOsI_02157
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 638aa    MW: 71068.5 Da    PI: 8.9522
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001541-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.34.4e-13386476397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       f r w+ +Dei++L +l+d   + g  p++     f+e v++    ++++s++ eK+r+LK+++++ v         +++k+hd +  els  
  BGIOSGA001541-PA 386 FGRKWNGNDEIMILEALVDQIRSGGNVPQEpGHPLFHELVQRLEGRTFNHSDVREKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSCE 473
                       6799****************999999998845556777777777789********************999.....789*************** PP

            DUF573  95 iWg 97 
                       iWg
  BGIOSGA001541-PA 474 IWG 476
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-12386476IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MRRRSPPPAA AQPPRPPTRA AESGEEGGDP GKDEVAAPPK GDSALPRSGS GFGSGNAAAP  60
DGPAKSPMKP KKRVTAPPSS DHGSRENLAA GSPSNEGRTF NHSDVRDKVR SLKRRYNDVV  120
LSGLAITKDH DLQLHELSCE IWGRSVAHAG DDKQRCLARD EQSSLARDEQ KSFARDEEKS  180
LARDEQSSLA RDEQKSFARD EKSLARDEEK SLASDEQRSF DDMCKQFPLL AKEIKVLMEG  240
QPAIMELFPR LDGDQVVAIE KKLENLRWID MKRKKKMAVK MAKIRKGLIY KLEGAAILAD  300
GKAKKKASAQ ARKKPSAKQH AAAQEEEDGD LMAEAEEEVA PRQGDEEDGK GPLPQRKSKR  360
VAALSGSICP PDPKRAKIVD AQKPGFGRKW NGNDEIMILE ALVDQIRSGG NVPQEPGHPL  420
FHELVQRLEG RTFNHSDVRE KVRSLKRRYN DVVLSGLAIT KDHDLQLHEL SCEIWGRSVA  480
HAGDDKQRCL ARDEQSSLAR DEQKSFAGDE EKSLARDEQS SLARDEQKSF ARDEKSLARD  540
EEKSLASDEQ RSFDDMCKQF PLLAKEIKVL MEGQPAIMEL FPRLDSDQVV AIEKKLENLR  600
WIDMKRKKKM AVKMAKIRKG LIYKLEGAVI LADGNMIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301313KAKKKASAQARKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.374030.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329687750.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029700.0AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03.
GenBankAP0032130.0AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.10.0basic salivary proline-rich protein 2
TrEMBLB8A8X80.0B8A8X8_ORYSI; Uncharacterized protein
STRINGONIVA01G19420.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-06DNA-binding storekeeper protein-related transcriptional regulator