PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001460-PA
Common NameOsI_02338
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 290aa    MW: 31862.8 Da    PI: 7.6178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001460-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+l + + ++G g+W+++++  g+ R++k+c++rw +yl
  BGIOSGA001460-PA 17 RGLWSPEEDEKLFNHISRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 64
                      788*******************************************97 PP
2Myb_DNA-binding521.6e-1670114147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++++E+el++ ++k lG++ W+ Ia+ ++ gRt++++k++w++ 
  BGIOSGA001460-PA  70 RGSFSQQEEELIISLHKILGNR-WSQIAAQLP-GRTDNEIKNFWNSC 114
                       899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-24967IPR009057Homeodomain-like
PROSITE profilePS5129418.8451264IPR017930Myb domain
SuperFamilySSF466891.98E-2914111IPR009057Homeodomain-like
SMARTSM007173.0E-131666IPR001005SANT/Myb domain
PfamPF002491.6E-141764IPR001005SANT/Myb domain
CDDcd001676.23E-122064No hitNo description
PROSITE profilePS5129426.13965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2668119IPR009057Homeodomain-like
SMARTSM007178.7E-1669117IPR001005SANT/Myb domain
PfamPF002496.8E-1570114IPR001005SANT/Myb domain
CDDcd001671.40E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRESAAACS PKPKLRRGLW SPEEDEKLFN HISRYGVGCW SSVPKLAGLE RCGKSCRLRW  60
INYLRPDLKR GSFSQQEEEL IISLHKILGN RWSQIAAQLP GRTDNEIKNF WNSCLKKKLR  120
QRGIDPATHK PLNDGGAGAG EEHHDDGDKQ QLMDDVDDCF AIGGGGSSDS LAPPHSPAVS  180
FDPLPEDEVV SHGYPNLELR FLSLPALTLK ESSRYISDHL DLTSLAHRLL SHPPRHLDSS  240
PAWGGGRAIS THKALCPSSV ASSSALPRAW PVSNRWSSLD LLMASDHAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131193108B-MYB
1h8a_C2e-301311923128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKKKLRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.808130.0panicle| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925931e-160FP092593.1 Phyllostachys edulis cDNA clone: bphylf046j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643158.11e-132myb-related protein Hv33
SwissprotP200275e-74MYB3_HORVU; Myb-related protein Hv33
TrEMBLB8AA260.0B8AA26_ORYSI; Uncharacterized protein
STRINGORUFI01G21210.11e-131(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-75myb domain protein 86